Ss1.1-Pig4-TMW8053E15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTCCTCCTCGCCCTCCAGGCCGCTTGCTTCCAGCCGGGAATCTCCCCGCCGCAGCTCT GCTATCCGCCCTCCACCCTCAGCCATGTTGCCCGCTACTCTGCTCCGCCGCTCGGGTCTT GGCCGAGTCGTGCGCCAGGCTCGCGCCTACGCCGAGGCCGCCGCCGCCCCGGCCTCTGCA GCAGGCCCAGGGCAGATGTCCTTCACCTTCGCCTCACCCACTCAGGTGTTCTTCAACGGA GCCAACGTCAGGCAGGTGGACGTTCCCACGCAGACAGGAGCCTTTGGCATCTTAGCATCC CACGTGCCCACTCTGCAGGTCCTGCGGCCAGGGTTGGTTGTGGTTCACGCTGAGGATGGC ACCACCTCCAAATACTTTGTGAGCAGCGGCTCTGTCACGGTTAACGCTGACTCTTCTGTG CAGTTACTGGCTGAAGAAGCTGTGACACTGGACATGCTGGACCCTGGGGTGGCCAAGGCG AACCTGGAGAAGGCGCAGTCGGAGCTGTTGGGGGCTGCAGATGAGGCATCAAGGGCTGAG ATCCAAATCCGTATTGAGGCCAATGAGGCCCTGGTGAAGGCCCTGGAGTAGGCGGTGTGT GCCTCCATGGTGGCTATGGCAGGGAAAGCCAGGGAAAATGAGGCCTGGAGCTGGAGGGGT GTCCTGGCCAGATTGAACCAGCTCTTGTGGTCAGGCTGACTAGGGGGTGGGGGGAGTGAG CAAGCTGGCCAGCCACCCTTGGAGCAGCACTTTTTTGGGGGGAGCTGACCTTACTAGGAA ACCACTAGGGGGCAGCATGGTGACGGCTTCTGCCCAGAGCACCCTTTGGGGCCCTGCCCC TTTGGAGCCAAATAAACCCATGGGATTAAGTCCCTTGCCCTTGCTGGCAGGCCTGGTGGC TGGGGGCAAGCTTGGGTGCTTGCCTTGCCCATGTGGGGGTACTGTCATCCTGAGGGGCTC TCCTCCCATCTCCCAGGATTTCCACGGGCTGATGTGCCCACTACTCCTCTGTCCCTGCAT AGCCTGCTGCAGAAATCTGCTCCTGGCCACTTCCAATGGACAGTTTGCCCCCTTCCCGAG CCCCCTATTAAAGACCTGGGACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTCCTCCTCGCCCTCCAGGCCGCTTGCTTCCAGCCGGGAATCTCCCCGCCGCAGCTCT GCTATCCGCCCTCCACCCTCAGCCATGTTGCCCGCTACTCTGCTCCGCCGCTCGGGTCTT GGCCGAGTCGTGCGCCAGGCTCGCGCCTACGCCGAGGCCGCCGCCGCCCCGGCCTCTGCA GCAGGCCCAGGGCAGATGTCCTTCACCTTCGCCTCACCCACTCAGGTGTTCTTCAACGGA GCCAACGTCAGGCAGGTGGACGTTCCCACGCAGACAGGAGCCTTTGGCATCTTAGCATCC CACGTGCCCACTCTGCAGGTCCTGCGGCCAGGGTTGGTTGTGGTTCACGCTGAGGATGGC ACCACCTCCAAATACTTTGTGAGCAGCGGCTCTGTCACGGTTAACGCTGACTCTTCTGTG CAGTTACTGGCTGAAGAAGCTGTGACACTGGACATGCTGGACCCTGGGGTGGCCAAGGCG AACCTGGAGAAGGCGCAGTCGGAGCTGTTGGGGGCTGCAGATGAGGCATCAAGGGCTGAG ATCCAAATCCGTATTGAGGCCAATGAGGCCCTGGTGAAGGCCCTGGAGTAGGCGGTGTGT GCCTCCATGGTGGCTATGGCAGGGAAAGCCAGGGAAAATGAGGCCTGGAGCTGGAGGGGT GTCCTGGCCAGATTGAACCAGCTCTTGTGGTCAGGCTGACTAGGGGGTGGGGGGAGTGAG CAAGCTGGCCAGCCACCCTTGGAGCAGCACTTTTTTGGGGGGAGCTGACCTTACTAGGAA ACCACTAGGGGGCAGCATGGTGACGGCTTCTGCCCAGAGCACCCTTTGGGGCCCTGCCCC TTTGGAGCCAAATAAACCCATGGGATTAAGTCCCTTGCCCTTGCTGGCAGGCCTGGTGGC TGGGGGCAAGCTTGGGTGCTTGCCTTGCCCATGTGGGGGTACTGTCATCCTGAGGGGCTC TCCTCCCATCTCCCAGGATTTCCACGGGCTGATGTGCCCACTACTCCTCTGTCCCTGCAT AGCCTGCTGCAGAAATCTGCTCCTGGCCACTTCCAATGGACAGTTTGCCCCCTTCCCGAG CCCCCTATTAAAGACCTGGGACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 224-383, gnl|bosTau2|chr7 (29204755-29204595) | |
| 224-383, gnl|canFam2|chr20 (60689602-60689421) | |
| 224-383, gnl|danRer3|chr22 (24665298-24665471) | |
| 224-383, gnl|dasNov1|scaffold_270488 (53-216) | |
| 224-383, gnl|echTel1|scaffold_313784 (51872-51702) | |
| 224-383, gnl|fr1|chrUn (204436396-204436567) | |
| 224-383, gnl|hg17|chr19 (1193436-1193617) | |
| 224-383, gnl|Hg17|chr19 (1193453-1193613) | |
| 224-383, gnl|loxAfr1|scaffold_70089 (11883-12064) | |
| 224-383, gnl|mm7|chr10 (79924640-79924825) | |
| 224-383, gnl|Mm7|chr10 (79924661-79924821) | |
| 224-383, gnl|monDom2|scaffold_75 (6471517-6471336) | |
| 224-383, gnl|panTro1|chr20_random (1572443-1572262) | |
| 224-383, gnl|rheMac2|chr19 (997616-997796) | |
| 224-383, gnl|rn3|chr7 (11074736-11074551) | |
| 224-383, gnl|tetNig1|chr1_random (3633888-3633723) | |
| 224-383, gnl|xenTro1|scaffold_342 (481145-480966) | |
| 462-605, gnl|bosTau2|chr7 (29203942-29203798) | |
| 462-605, gnl|canFam2|chr3 (35331852-35331725) | |
| 462-605, gnl|dasNov1|scaffold_223377 (3456-3313) | |
| 462-605, gnl|Hg17|chr19 (1195306-1195448) | |
| 462-605, gnl|hg17|chr6 (84811689-84811822) | |
| 462-605, gnl|mm7|chr10 (79926252-79926378) | |
| 462-605, gnl|Mm7|chr10 (79926245-79926393) | |
| 462-605, gnl|panTro1|chr5_random (49184233-49184100) | |
| 462-605, gnl|rheMac2|chr4 (80080614-80080755) | |
| 462-605, gnl|rn3|chr4 (76348053-76348187) | |
| 756-971, gnl|bosTau2|chr7 (29203700-29203495) | |
| 756-971, gnl|Hg17|chr19 (1195525-1195721) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 224-383, gnl|bosTau2|chr7 (29204755-29204595) | |
| 224-383, gnl|canFam2|chr20 (60689602-60689421) | |
| 224-383, gnl|danRer3|chr22 (24665298-24665471) | |
| 224-383, gnl|dasNov1|scaffold_270488 (53-216) | |
| 224-383, gnl|echTel1|scaffold_313784 (51872-51702) | |
| 224-383, gnl|fr1|chrUn (204436396-204436567) | |
| 224-383, gnl|hg17|chr19 (1193436-1193617) | |
| 224-383, gnl|Hg17|chr19 (1193453-1193613) | |
| 224-383, gnl|loxAfr1|scaffold_70089 (11883-12064) | |
| 224-383, gnl|mm7|chr10 (79924640-79924825) | |
| 224-383, gnl|Mm7|chr10 (79924661-79924821) | |
| 224-383, gnl|monDom2|scaffold_75 (6471517-6471336) | |
| 224-383, gnl|panTro1|chr20_random (1572443-1572262) | |
| 224-383, gnl|rheMac2|chr19 (997616-997796) | |
| 224-383, gnl|rn3|chr7 (11074736-11074551) | |
| 224-383, gnl|tetNig1|chr1_random (3633888-3633723) | |
| 224-383, gnl|xenTro1|scaffold_342 (481145-480966) | |
| 462-605, gnl|bosTau2|chr7 (29203942-29203798) | |
| 462-605, gnl|canFam2|chr3 (35331852-35331725) | |
| 462-605, gnl|dasNov1|scaffold_223377 (3456-3313) | |
| 462-605, gnl|Hg17|chr19 (1195306-1195448) | |
| 462-605, gnl|hg17|chr6 (84811689-84811822) | |
| 462-605, gnl|mm7|chr10 (79926252-79926378) | |
| 462-605, gnl|Mm7|chr10 (79926245-79926393) | |
| 462-605, gnl|panTro1|chr5_random (49184233-49184100) | |
| 462-605, gnl|rheMac2|chr4 (80080614-80080755) | |
| 462-605, gnl|rn3|chr4 (76348053-76348187) | |
| 756-971, gnl|bosTau2|chr7 (29203700-29203495) | |
| 756-971, gnl|Hg17|chr19 (1195525-1195721) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| col (0.975039) | |
| cag (0.907167) | |
| ill (0.877963) | |
| fbs (0.876732) | |
| hlv (0.835538) | |
| nca (0.821243) | |
| nco (0.808669) | |
| nlu (0.766724) | |
| hyp (0.714184) | |
| nms (0.641574) | |
| lnt (0.569233) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| cly (0.482567) | |
| eru (0.480192) | |
| ebs (0.473205) | |
| mas (0.42061) | |
| fli (0.405762) | |
| cov (0.396458) | |
| elu (0.385356) | |
| ese (0.379507) | |
| fty (0.351679) | |
| nje (0.33184) | |
| cli (0.305623) | |
| eli (0.303628) | |
| nbm (0.297974) | |
| pty (0.285429) | |
| che (0.272628) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| jca (0.22792) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cst (0.140036) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.975039) | |
| cag (0.907167) | |
| ill (0.877963) | |
| fbs (0.876732) | |
| hlv (0.835538) | |
| nca (0.821243) | |
| nco (0.808669) | |
| nlu (0.766724) | |
| hyp (0.714184) | |
| nms (0.641574) | |
| lnt (0.569233) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| cly (0.482567) | |
| eru (0.480192) | |
| ebs (0.473205) | |
| mas (0.42061) | |
| fli (0.405762) | |
| cov (0.396458) | |
| elu (0.385356) | |
| ese (0.379507) | |
| fty (0.351679) | |
| nje (0.33184) | |
| cli (0.305623) | |
| eli (0.303628) | |
| nbm (0.297974) | |
| pty (0.285429) | |
| che (0.272628) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| jca (0.22792) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cst (0.140036) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |