Non-Coding RNA Search

Ss1.1-Pig4-TMW8053F10.5

Sequence:


               
               GGGGAGATGGAGCCCCCGGCTGCCCCTGCCGCCCTCATCAAGGTGCCCGGAGCAGGAACA
GCCCCCAAGCCTGTGTCTGTGGCCTGCACCCAGCTGGCATTTTCTGGCCCTAAGCTGGCT
CCCCGGCTTGGCCCCCGCCCGGTGCCCCCTCCAAGGCCAGAGAGCACTGGGGCCTCGGGC
CCAGGCCAGGCCCAGCAGAGACTGGAACAGACCAGCTCATCCTTGGCAGCGGCACTGCGG
GCGGCGGAGAAAAGCATTGGTGCTGAGGAGCGAGAGGGGCCCCCTGGCACCTCCACCAAG
CACATTCTGGATGACATCAGCACCATGTTCGATGCCCTGGCTAACCAGCTGGATGCCATG
CTGGACTGAGTGGACCTGCCAGGAGCCTTCGACAGTGCCCTCCGTGCCCTGCAGCGGCCC
CTGCCTGTCCCCCGGCACAGAAGCAGCTCCTGCCGCCCTAGCAGGGTCCCTCCTGCTGCT
CCGAGCCAGCAGCTGTCAGCACTGCAGCTCCAGGAGGCAGCCCCACGGGAGCCGAAGGGA
CTTGTCAGAACCTGACCTCTCAGCAAAGCCCCCCCCAGAGTGTAATCCGACGGGACGGCC
CTGCCCCTTGGACAGGGACCCTGGTAAGAGCTTCCTCCCCAGGAAGAAAGCAGTGGTGGC
AGGGCTCCTGGGGTGTTTTCTCTGTCCCTGCATCAAGGCCCTCTGGCCACCCGCTGTGCT
GTCCCGGCTCCCTGAGGAGGCGGTGTGTCTAGCCTGGTTCCCTGCACGTGTACATGGGAC
GTGTAAATAAGCAGCCAGGGACCTGCTCCCAGCGGTGGCCGTGGCAGCGCCCAGGCCGGC
CTCTGCTCCCGCCCCTGCCTGCCCTCAGTGAGGCAGGCAAAGCTGGCAGGGGTGGGGGCA
CTGGATTAACAGATCCCTTAAACAGATCCGCAAAGTCCAAATCTTTTCAACTGTAAATGT
TATTTTTTAAGCAGAGAGAAATGCATATATTTTAAAAGGAATTTATTCTATCTATAACCG
CCTGAGAGGACGCAGTGGGGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGATGGAGCCCCCGGCTGCCCCTGCCGCCCTCATCAAGGTGCCCGGAGCAGGAACA
GCCCCCAAGCCTGTGTCTGTGGCCTGCACCCAGCTGGCATTTTCTGGCCCTAAGCTGGCT
CCCCGGCTTGGCCCCCGCCCGGTGCCCCCTCCAAGGCCAGAGAGCACTGGGGCCTCGGGC
CCAGGCCAGGCCCAGCAGAGACTGGAACAGACCAGCTCATCCTTGGCAGCGGCACTGCGG
GCGGCGGAGAAAAGCATTGGTGCTGAGGAGCGAGAGGGGCCCCCTGGCACCTCCACCAAG
CACATTCTGGATGACATCAGCACCATGTTCGATGCCCTGGCTAACCAGCTGGATGCCATG
CTGGACTGAGTGGACCTGCCAGGAGCCTTCGACAGTGCCCTCCGTGCCCTGCAGCGGCCC
CTGCCTGTCCCCCGGCACAGAAGCAGCTCCTGCCGCCCTAGCAGGGTCCCTCCTGCTGCT
CCGAGCCAGCAGCTGTCAGCACTGCAGCTCCAGGAGGCAGCCCCACGGGAGCCGAAGGGA
CTTGTCAGAACCTGACCTCTCAGCAAAGCCCCCCCCAGAGTGTAATCCGACGGGACGGCC
CTGCCCCTTGGACAGGGACCCTGGTAAGAGCTTCCTCCCCAGGAAGAAAGCAGTGGTGGC
AGGGCTCCTGGGGTGTTTTCTCTGTCCCTGCATCAAGGCCCTCTGGCCACCCGCTGTGCT
GTCCCGGCTCCCTGAGGAGGCGGTGTGTCTAGCCTGGTTCCCTGCACGTGTACATGGGAC
GTGTAAATAAGCAGCCAGGGACCTGCTCCCAGCGGTGGCCGTGGCAGCGCCCAGGCCGGC
CTCTGCTCCCGCCCCTGCCTGCCCTCAGTGAGGCAGGCAAAGCTGGCAGGGGTGGGGGCA
CTGGATTAACAGATCCCTTAAACAGATCCGCAAAGTCCAAATCTTTTCAACTGTAAATGT
TATTTTTTAAGCAGAGAGAAATGCATATATTTTAAAAGGAATTTATTCTATCTATAACCG
CCTGAGAGGACGCAGTGGGGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870970|ref|XP_594346.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870970|ref|XP_594346.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               528-666, - strand, RNAz p=0.996831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-666, - strand, RNAz p=0.996831

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               52-279, gnl|bosTau2|chr19 (51578646-51578873)
               

               
               52-279, gnl|Hg17|chr17 (71009370-71009143)
               

               
               52-279, gnl|Mm7|chr11 (115909631-115909404)
               


               
               281-688, gnl|bosTau2|chr19 (51579259-51579665)
               

               
               281-688, gnl|Hg17|chr17 (71008844-71008410)
               

               
               281-688, gnl|Mm7|chr11 (115909120-115908703)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-279, gnl|bosTau2|chr19 (51578646-51578873)
               

               
               52-279, gnl|Hg17|chr17 (71009370-71009143)
               

               
               52-279, gnl|Mm7|chr11 (115909631-115909404)
               


               
               281-688, gnl|bosTau2|chr19 (51579259-51579665)
               

               
               281-688, gnl|Hg17|chr17 (71008844-71008410)
               

               
               281-688, gnl|Mm7|chr11 (115909120-115908703)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cga (0.279096)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               che (0.136314)

	52-279, gnl\|bosTau2\|chr19 (51578646-51578873)
	52-279, gnl\|Hg17\|chr17 (71009370-71009143)
	52-279, gnl\|Mm7\|chr11 (115909631-115909404)

	281-688, gnl\|bosTau2\|chr19 (51579259-51579665)
	281-688, gnl\|Hg17\|chr17 (71008844-71008410)
	281-688, gnl\|Mm7\|chr11 (115909120-115908703)