Ss1.1-Pig4-TMW8053F11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCCCACCGGTGATCAGCTGGTCTGCGCTCCTCTGACGTGAGCCTGGGCACGTCACCGC CGAATGGCAGCCTCCAGAAAGGCACCGCGAGTAAGGGCAAATTACCAGGATTTTCAGCTG AAGAATTTAAGAATAATTGAACCTAACGAGGTGACACGTTCAGGATACCCAGGTGTAGGA ACAGACGGCAGAATGGCTCCAAAGGTAACTTCAGAGCTGCTTCGGCAGCTGAGACAAGCC ATGAAGAACTTGGAGTATGTGACAGAACCAATCCAGGCCTACATCATCCCATCGGGAGAC GCCCACCAGAGTGAGTACATTGCTCCATGTGATTGTCGGCGGGCCTTCGTCTCTGGATTC GATGGCTCTGCAGGCACAGCCATCATCACAGAAGAGCACGCGGCCATGTGGACAGATGGG CGTTACTTTCTCCAGGCTGCCAAGCAGATGGACAGCAACTGGACACTCATGAAGATGGGT CTGAAGGACACACCAACTCAGGAAGACTGGCTGGTGAGTGTACTTCCTGAAGGATCCAGG GTTGGTGTGGACCCATTGATCATTCCTACAGATTACTGGAAGAAGATGGCCAAGGTTCTG AGAAGCGCTGGCCACCACCTTGTTCCTGTCAAGGAGAACCTTGTGGACAAGATCTGGACA GACCGCCCTGAGCGTCCGTGCAAGCCCCTCCTCACCCTGGGCCTGGATTACACAGGCATC TCCTGGAAAGACAAGGTTGCGGACCTTCGGTTGAAAATGGCCGAGAGGAATGTCGTGTGG TTTGTGGTCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCCCACCGGTGATCAGCTGGTCTGCGCTCCTCTGACGTGAGCCTGGGCACGTCACCGC CGAATGGCAGCCTCCAGAAAGGCACCGCGAGTAAGGGCAAATTACCAGGATTTTCAGCTG AAGAATTTAAGAATAATTGAACCTAACGAGGTGACACGTTCAGGATACCCAGGTGTAGGA ACAGACGGCAGAATGGCTCCAAAGGTAACTTCAGAGCTGCTTCGGCAGCTGAGACAAGCC ATGAAGAACTTGGAGTATGTGACAGAACCAATCCAGGCCTACATCATCCCATCGGGAGAC GCCCACCAGAGTGAGTACATTGCTCCATGTGATTGTCGGCGGGCCTTCGTCTCTGGATTC GATGGCTCTGCAGGCACAGCCATCATCACAGAAGAGCACGCGGCCATGTGGACAGATGGG CGTTACTTTCTCCAGGCTGCCAAGCAGATGGACAGCAACTGGACACTCATGAAGATGGGT CTGAAGGACACACCAACTCAGGAAGACTGGCTGGTGAGTGTACTTCCTGAAGGATCCAGG GTTGGTGTGGACCCATTGATCATTCCTACAGATTACTGGAAGAAGATGGCCAAGGTTCTG AGAAGCGCTGGCCACCACCTTGTTCCTGTCAAGGAGAACCTTGTGGACAAGATCTGGACA GACCGCCCTGAGCGTCCGTGCAAGCCCCTCCTCACCCTGGGCCTGGATTACACAGGCATC TCCTGGAAAGACAAGGTTGCGGACCTTCGGTTGAAAATGGCCGAGAGGAATGTCGTGTGG TTTGTGGTCACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 420-514, + strand, RNAz p=0.852428 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 420-514, + strand, RNAz p=0.852428 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC007579, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 182-309, gnl|bosTau2|chr26 (19880615-19880742) | |
| 182-309, gnl|Hg17|chr10 (111657566-111657439) | |
| 182-309, gnl|Mm7|chr19 (52926026-52925899) | |
| 368-514, gnl|bosTau2|chr26 (19893451-19893600) | |
| 368-514, gnl|Hg17|chr10 (111641580-111641430) | |
| 368-514, gnl|Mm7|chr19 (52914149-52913980) | |
| 564-716, gnl|bosTau2|chr26 (19897254-19897405) | |
| 564-716, gnl|canFam2|chr28 (24291317-24291480) | |
| 564-716, gnl|danRer3|chr22 (38649170-38649335) | |
| 564-716, gnl|dasNov1|scaffold_24192 (13727-13563) | |
| 564-716, gnl|echTel1|scaffold_218398 (12231-12067) | |
| 564-716, gnl|fr1|chrUn (79681996-79681827) | |
| 564-716, gnl|galGal2|chr6 (24758751-24758908) | |
| 564-716, gnl|hg17|chr10 (111637785-111637950) | |
| 564-716, gnl|Hg17|chr10 (111637947-111637796) | |
| 564-716, gnl|mm7|chr19 (52912395-52912559) | |
| 564-716, gnl|Mm7|chr19 (52912556-52912405) | |
| 564-716, gnl|monDom2|scaffold_14 (53585137-53584973) | |
| 564-716, gnl|oryCun1|scaffold_214048 (43198-43362) | |
| 564-716, gnl|panTro1|chr8 (113543848-113544013) | |
| 564-716, gnl|rheMac2|chr9 (109558950-109559114) | |
| 564-716, gnl|rn3|chr1 (259375987-259376151) | |
| 564-716, gnl|tetNig1|chr18 (2308642-2308794) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-309, gnl|bosTau2|chr26 (19880615-19880742) | |
| 182-309, gnl|Hg17|chr10 (111657566-111657439) | |
| 182-309, gnl|Mm7|chr19 (52926026-52925899) | |
| 368-514, gnl|bosTau2|chr26 (19893451-19893600) | |
| 368-514, gnl|Hg17|chr10 (111641580-111641430) | |
| 368-514, gnl|Mm7|chr19 (52914149-52913980) | |
| 564-716, gnl|bosTau2|chr26 (19897254-19897405) | |
| 564-716, gnl|canFam2|chr28 (24291317-24291480) | |
| 564-716, gnl|danRer3|chr22 (38649170-38649335) | |
| 564-716, gnl|dasNov1|scaffold_24192 (13727-13563) | |
| 564-716, gnl|echTel1|scaffold_218398 (12231-12067) | |
| 564-716, gnl|fr1|chrUn (79681996-79681827) | |
| 564-716, gnl|galGal2|chr6 (24758751-24758908) | |
| 564-716, gnl|hg17|chr10 (111637785-111637950) | |
| 564-716, gnl|Hg17|chr10 (111637947-111637796) | |
| 564-716, gnl|mm7|chr19 (52912395-52912559) | |
| 564-716, gnl|Mm7|chr19 (52912556-52912405) | |
| 564-716, gnl|monDom2|scaffold_14 (53585137-53584973) | |
| 564-716, gnl|oryCun1|scaffold_214048 (43198-43362) | |
| 564-716, gnl|panTro1|chr8 (113543848-113544013) | |
| 564-716, gnl|rheMac2|chr9 (109558950-109559114) | |
| 564-716, gnl|rn3|chr1 (259375987-259376151) | |
| 564-716, gnl|tetNig1|chr18 (2308642-2308794) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| ill (0.175593) | |
| nco (0.161734) |