Non-Coding RNA Search

Ss1.1-Pig4-TMW8053F14.5

Sequence:


               
               TGAAACCCAGAGAACGATGGAAACTCTTCAGCTTGGAAAAACCCTTAATGGTTCTGAGTG
AAGACAACGCAGAGCAAAGTGGGGAAGAGGAAGCAGAGGCACCTGAGGTGCCGGGGCCAG
GGAGGGATAGTGAGGCCTGGACTACTGACCATCAAGCAAGTCAGGAGCAGCAGAAGCCCA
GCACCTGCAGCTCACTGAACAAGGAGCAGTCTGATTCTAATTACACACCCCCAAACCTAT
AACTCAGGAAATGTAAACTATCTGTCTCCACCTGTGTAAGGGTTGCAGCCATTATCTTTC
ATGCTTCATCTCAACATTTTGCACTGTCCAGTATTTAATATATGTATTTAATTCCTGACA
GAAATATTTTTGTAGCTGTCTTTTACTTGTTTTGATCTATAGCTTAGCTTTTTATTAGCA
TCTGAGTGTCTTTCTATGAACTGTGTGGAAAGTTCAGAATTGTTTCAGCTTATTTTGTTA
TGGAAAACAGTGATTAAAAAAGACCAGGTTTTAAAGGAAGTAAATTTACAGTGCCTATTT
AGAGTCATTTTGAACGTTAAAAATCACGGTTCTGAGAATAGGAGCAGTTACCGGTGTTTG
CTTCAAGACTACACCTCCTTCACTCTAATTTGTCTGACCAAAAAGTTGTTTGGGTTTTTT
TAAAAAAGAACTGGAGGTTCTGGAGTTAAAAAAAATTAGCTGAGGGTAACTCTAAGTTCA
CAAAGTGTTTTGTGTTGAAATTTGGTGCAACTTTTATTTAGTCCACAGATGCTTATTTCA
TAAGTCACTGATCATTGTAATTGATTATAGTTGGGATGGGCTAAGACAGAGCCTCCAAAA
CTTAGACTAGCAAAGGAGCCACTATGTATGATAGGTTAGAGCTGGCCTTATTTGTGGAAA
GTGATAGATGTTGTCTTTAATAGTGAGAAGTCACCCATGGTAGGAACTTCCAGGTTCTGT
TTCACATTTGCTTTTTACTTACCTCAGGAATGCTCTTGTACATACATAGTCATATTTGCA
TAAGGTTAGGCAGATTTTGACAGATGAATAACTGTAACTGATTTGTATGACTTCAGCACT
AAACATGTAAACTATCTAGAAACAATATCTTAACACTGGTGTGTTCTCTTGCATGCTTCT
GATTTGGGATTCTCTGGACTTGAGATGAGAATTTGACTGGGTACTCAAAACAAACCTTTC
CTGAGTGAAAAGCTATTGCACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACCCAGAGAACGATGGAAACTCTTCAGCTTGGAAAAACCCTTAATGGTTCTGAGTG
AAGACAACGCAGAGCAAAGTGGGGAAGAGGAAGCAGAGGCACCTGAGGTGCCGGGGCCAG
GGAGGGATAGTGAGGCCTGGACTACTGACCATCAAGCAAGTCAGGAGCAGCAGAAGCCCA
GCACCTGCAGCTCACTGAACAAGGAGCAGTCTGATTCTAATTACACACCCCCAAACCTAT
AACTCAGGAAATGTAAACTATCTGTCTCCACCTGTGTAAGGGTTGCAGCCATTATCTTTC
ATGCTTCATCTCAACATTTTGCACTGTCCAGTATTTAATATATGTATTTAATTCCTGACA
GAAATATTTTTGTAGCTGTCTTTTACTTGTTTTGATCTATAGCTTAGCTTTTTATTAGCA
TCTGAGTGTCTTTCTATGAACTGTGTGGAAAGTTCAGAATTGTTTCAGCTTATTTTGTTA
TGGAAAACAGTGATTAAAAAAGACCAGGTTTTAAAGGAAGTAAATTTACAGTGCCTATTT
AGAGTCATTTTGAACGTTAAAAATCACGGTTCTGAGAATAGGAGCAGTTACCGGTGTTTG
CTTCAAGACTACACCTCCTTCACTCTAATTTGTCTGACCAAAAAGTTGTTTGGGTTTTTT
TAAAAAAGAACTGGAGGTTCTGGAGTTAAAAAAAATTAGCTGAGGGTAACTCTAAGTTCA
CAAAGTGTTTTGTGTTGAAATTTGGTGCAACTTTTATTTAGTCCACAGATGCTTATTTCA
TAAGTCACTGATCATTGTAATTGATTATAGTTGGGATGGGCTAAGACAGAGCCTCCAAAA
CTTAGACTAGCAAAGGAGCCACTATGTATGATAGGTTAGAGCTGGCCTTATTTGTGGAAA
GTGATAGATGTTGTCTTTAATAGTGAGAAGTCACCCATGGTAGGAACTTCCAGGTTCTGT
TTCACATTTGCTTTTTACTTACCTCAGGAATGCTCTTGTACATACATAGTCATATTTGCA
TAAGGTTAGGCAGATTTTGACAGATGAATAACTGTAACTGATTTGTATGACTTCAGCACT
AAACATGTAAACTATCTAGAAACAATATCTTAACACTGGTGTGTTCTCTTGCATGCTTCT
GATTTGGGATTCTCTGGACTTGAGATGAGAATTTGACTGGGTACTCAAAACAAACCTTTC
CTGAGTGAAAAGCTATTGCACCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-200, + strand, RNAz p=0.864933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, + strand, RNAz p=0.864933

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014701, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014701, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr10 (42357418-42356217)
               

               
               1-1224, gnl|Hg17|chr15 (47071973-47070774)
               

               
               1-1224, gnl|Mm7|chr2 (125481337-125480222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr10 (42357418-42356217)
               

               
               1-1224, gnl|Hg17|chr15 (47071973-47070774)
               

               
               1-1224, gnl|Mm7|chr2 (125481337-125480222)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-1224, gnl\|bosTau2\|chr10 (42357418-42356217)
	1-1224, gnl\|Hg17\|chr15 (47071973-47070774)
	1-1224, gnl\|Mm7\|chr2 (125481337-125480222)