Non-Coding RNA Search

Ss1.1-Pig4-TMW8053F16.3

Sequence:


               
               CCTGGCCGCCGCGCCAGCCTGTCTCCGCGGCTGGGGACCCGGCTGCCTCGGCCCCTCCGC
TTGTCGTCTTTTATGAGCCGCAATGCGCTTCCTGTTGTCCTCACCGACAACCGCCCCTCG
GCCCCCTACCTCAGAGCTCCTTACGCGTCCCCACCCCTCTTCTGGTCGGCTGGCTGCTGC
CGCTGGGGTTTCGCCTGTCCGCACGTCGAGTCCGCTGGCTCGGCCGGCGTCTGCGGCTGT
GTCTGTTCAGTCTGGCTTGGTTGCTGTGTCTAAAGGCCAGGGAAGGGAGGAGTTGCTTCT
CAAGGGTCCATCTGTGGTGCTCTTGTGTGTGAACAGGTGATGCTTCATCTGGTGTGGCCC
TGCTTTCCACATGGGCTAAACGACAAATACAGCTCTGTTTTAGAGTTTCAGAATTCCAGC
TGCTCCTCTTCCTACCTCTCTCCCTCTTTATTTAAACATTAGAAACGACTCAGGAGATCA
GCACATGCTCGGAAGGAAACAGAGTTTCTTCGTTTGAAGCGAACAAGACTTGGATTGGAA
GATTTTGAGTCCTTAAAAGTAATAGGCAGAGGAGCATTTGGTGAGGTAAATATACCATGG
CTACATATCAAATACAGAAAAACCACAGAGCTTCAAAGCTTCTAACATACCGTGACTTCA
GGATTGTTGATGTGACTAAAATACAGCATGGATGGATCAAGCATGCCAGCCCCACCCCAG
CCGCTCTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCGCCGCGCCAGCCTGTCTCCGCGGCTGGGGACCCGGCTGCCTCGGCCCCTCCGC
TTGTCGTCTTTTATGAGCCGCAATGCGCTTCCTGTTGTCCTCACCGACAACCGCCCCTCG
GCCCCCTACCTCAGAGCTCCTTACGCGTCCCCACCCCTCTTCTGGTCGGCTGGCTGCTGC
CGCTGGGGTTTCGCCTGTCCGCACGTCGAGTCCGCTGGCTCGGCCGGCGTCTGCGGCTGT
GTCTGTTCAGTCTGGCTTGGTTGCTGTGTCTAAAGGCCAGGGAAGGGAGGAGTTGCTTCT
CAAGGGTCCATCTGTGGTGCTCTTGTGTGTGAACAGGTGATGCTTCATCTGGTGTGGCCC
TGCTTTCCACATGGGCTAAACGACAAATACAGCTCTGTTTTAGAGTTTCAGAATTCCAGC
TGCTCCTCTTCCTACCTCTCTCCCTCTTTATTTAAACATTAGAAACGACTCAGGAGATCA
GCACATGCTCGGAAGGAAACAGAGTTTCTTCGTTTGAAGCGAACAAGACTTGGATTGGAA
GATTTTGAGTCCTTAAAAGTAATAGGCAGAGGAGCATTTGGTGAGGTAAATATACCATGG
CTACATATCAAATACAGAAAAACCACAGAGCTTCAAAGCTTCTAACATACCGTGACTTCA
GGATTGTTGATGTGACTAAAATACAGCATGGATGGATCAAGCATGCCAGCCCCACCCCAG
CCGCTCTCCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               485-604, + strand, RNAz p=0.5956

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               485-604, + strand, RNAz p=0.5956

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-240, gnl|bosTau2|chr23 (9722527-9722286)
               

               
               1-240, gnl|canFam2|chr12 (8636329-8637057)
               

               
               1-240, gnl|dasNov1|scaffold_1461 (95877-96594)
               

               
               1-240, gnl|echTel1|scaffold_311424 (1850-1178)
               

               
               1-240, gnl|hg17|chr6 (36622567-36623289)
               

               
               1-240, gnl|Hg17|chr6 (36623218-36622980)
               

               
               1-240, gnl|mm7|chr17 (27195882-27196435)
               

               
               1-240, gnl|monDom2|scaffold_42 (10080281-10079601)
               

               
               1-240, gnl|oryCun1|scaffold_194225 (8130-7427)
               

               
               1-240, gnl|panTro1|chr5 (37096483-37097206)
               

               
               1-240, gnl|rheMac2|chr4 (36303539-36304253)
               

               
               1-240, gnl|rn3|chr20 (7291731-7292282)
               


               
               258-655, gnl|bosTau2|chr23 (9704094-9703721)
               

               
               258-655, gnl|Hg17|chr6 (36600420-36600028)
               

               
               258-655, gnl|Mm7|chr17 (27179663-27179298)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr23 (9722527-9722286)
               

               
               1-240, gnl|canFam2|chr12 (8636329-8637057)
               

               
               1-240, gnl|dasNov1|scaffold_1461 (95877-96594)
               

               
               1-240, gnl|echTel1|scaffold_311424 (1850-1178)
               

               
               1-240, gnl|hg17|chr6 (36622567-36623289)
               

               
               1-240, gnl|Hg17|chr6 (36623218-36622980)
               

               
               1-240, gnl|mm7|chr17 (27195882-27196435)
               

               
               1-240, gnl|monDom2|scaffold_42 (10080281-10079601)
               

               
               1-240, gnl|oryCun1|scaffold_194225 (8130-7427)
               

               
               1-240, gnl|panTro1|chr5 (37096483-37097206)
               

               
               1-240, gnl|rheMac2|chr4 (36303539-36304253)
               

               
               1-240, gnl|rn3|chr20 (7291731-7292282)
               


               
               258-655, gnl|bosTau2|chr23 (9704094-9703721)
               

               
               258-655, gnl|Hg17|chr6 (36600420-36600028)
               

               
               258-655, gnl|Mm7|chr17 (27179663-27179298)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               jej (0.0989218)

	1-240, gnl\|bosTau2\|chr23 (9722527-9722286)
	1-240, gnl\|canFam2\|chr12 (8636329-8637057)
	1-240, gnl\|dasNov1\|scaffold_1461 (95877-96594)
	1-240, gnl\|echTel1\|scaffold_311424 (1850-1178)
	1-240, gnl\|hg17\|chr6 (36622567-36623289)
	1-240, gnl\|Hg17\|chr6 (36623218-36622980)
	1-240, gnl\|mm7\|chr17 (27195882-27196435)
	1-240, gnl\|monDom2\|scaffold_42 (10080281-10079601)
	1-240, gnl\|oryCun1\|scaffold_194225 (8130-7427)
	1-240, gnl\|panTro1\|chr5 (37096483-37097206)
	1-240, gnl\|rheMac2\|chr4 (36303539-36304253)
	1-240, gnl\|rn3\|chr20 (7291731-7292282)

	258-655, gnl\|bosTau2\|chr23 (9704094-9703721)
	258-655, gnl\|Hg17\|chr6 (36600420-36600028)
	258-655, gnl\|Mm7\|chr17 (27179663-27179298)