Non-Coding RNA Search

Ss1.1-Pig4-TMW8053G08.3

Sequence:


               
               TTACTTTCAAATCGGTCCCCCCCCGTCGAGTTTGGATCTGAGTGGGGAGCAGGACACTTG
GGGTTCTTCTTCCAGGACCTCGGAGAGGGCCTGCGGGAAGGGGTGCTGGGTGGCCCTGGC
AGTGTGTTCCTCCGTCACACCTCCGAGACGGCGGTCCCAAGTTTGCGACAGTTGGGAGCC
TTCTGGGGCTGTGGAAGTCACCTTGTTTGTTCCAAGTTTCCCGACGAGAGAAAATCATTC
CTTCTTTTTAAAATGGTGCTTAATTTCCAGCAGAGGCCACGTTGGGGTTTGCCACTGAAA
CCCCTGGGGAACATTTCTGTAAATACCATTGACACACTTGCCTTTTGTATACGTCCTGGG
TATTGAGAGGTGGCTTTTGCGGCCAGTATTAGACTGGAAGTTCATACCTAAGTACTGTAA
TACCTCAATGTTTGAGGAGCATGTTTTGTATACAAATATATTGTTAATCTCTGTTATGTA
CTGTACTAATTCTTACACTGCCTGTATACTTTAGTATGATGCTGATACATAACTAAATTT
GATACTTATATTTTCGTATGAAAATGAGTTGTGAAAGTTTTGAGTAGATATTACTTTATC
ACTTTTTGAACTAAGAAACTTTTGTAAAGAAATTTACTATATATATATGCCTTTTTCCTA
GCCTGTTTCTTCCGGTTAATGTATTTGTTCATGTTTGGTGCATAGAACTGGGTAAATGCA
AAGTTCTGTGTTTAATTTCTTCAAAATGTATATATTTAGTGCTGCATCTTATAGCACTTT
GAAATACCTCATGTTTATGAAAATAAATAGCAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTTTCAAATCGGTCCCCCCCCGTCGAGTTTGGATCTGAGTGGGGAGCAGGACACTTG
GGGTTCTTCTTCCAGGACCTCGGAGAGGGCCTGCGGGAAGGGGTGCTGGGTGGCCCTGGC
AGTGTGTTCCTCCGTCACACCTCCGAGACGGCGGTCCCAAGTTTGCGACAGTTGGGAGCC
TTCTGGGGCTGTGGAAGTCACCTTGTTTGTTCCAAGTTTCCCGACGAGAGAAAATCATTC
CTTCTTTTTAAAATGGTGCTTAATTTCCAGCAGAGGCCACGTTGGGGTTTGCCACTGAAA
CCCCTGGGGAACATTTCTGTAAATACCATTGACACACTTGCCTTTTGTATACGTCCTGGG
TATTGAGAGGTGGCTTTTGCGGCCAGTATTAGACTGGAAGTTCATACCTAAGTACTGTAA
TACCTCAATGTTTGAGGAGCATGTTTTGTATACAAATATATTGTTAATCTCTGTTATGTA
CTGTACTAATTCTTACACTGCCTGTATACTTTAGTATGATGCTGATACATAACTAAATTT
GATACTTATATTTTCGTATGAAAATGAGTTGTGAAAGTTTTGAGTAGATATTACTTTATC
ACTTTTTGAACTAAGAAACTTTTGTAAAGAAATTTACTATATATATATGCCTTTTTCCTA
GCCTGTTTCTTCCGGTTAATGTATTTGTTCATGTTTGGTGCATAGAACTGGGTAAATGCA
AAGTTCTGTGTTTAATTTCTTCAAAATGTATATATTTAGTGCTGCATCTTATAGCACTTT
GAAATACCTCATGTTTATGAAAATAAATAGCAATTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               702-816, gnl|bosTau2|chr7 (40747452-40747338)
               

               
               702-816, gnl|Hg17|chr2 (16037604-16037722)
               

               
               702-816, gnl|Mm7|chr12 (12998910-12998794)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               702-816, gnl|bosTau2|chr7 (40747452-40747338)
               

               
               702-816, gnl|Hg17|chr2 (16037604-16037722)
               

               
               702-816, gnl|Mm7|chr12 (12998910-12998794)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               ecc (0.23007)
               

               
               csp (0.161186)
               

               
               ski (0.146735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ecc (0.23007)
               

               
               csp (0.161186)
               

               
               ski (0.146735)

	702-816, gnl\|bosTau2\|chr7 (40747452-40747338)
	702-816, gnl\|Hg17\|chr2 (16037604-16037722)
	702-816, gnl\|Mm7\|chr12 (12998910-12998794)