Non-Coding RNA Search

Ss1.1-Pig4-TMW8053G13.5

Sequence:


               
               GGACACCAGAGATTGCCAGGTTTCCTTTACTTTTGGACCCTGTGATTATCACCAGGAAGT
TTCTCTTCGAGTCCATCTGATGGAATACATTACAAAGCAAGGTTTCACAATCCGCAACAC
CCGAGTGCATCACATGAGTGAGCGGGCCAACGAGAACACAGTGGAGCACAACTGGACTTT
CTGCAGGCTGGCCCGGAAGACCGATGACTGACCTTCAGCCTGGGAGAAGTTCCTACAAAT
GGACTCCCCAAGGAGATTGAAGAGGCTGTTTTTTGTTTGTTTGGTTTTTGTTTTTGTTTT
TTAAATCACAGTGTGAGGATTTTTTTTTTTTTTTTTAATATTTGTATTTATTTGAAGGCA
ATTGGGGACCAGAGGAAGTTTTGTGCTTTAGCAGACTCCTCTTTGTGTGGTTCCCTTCAC
CCTGAGTATGCATGTGCCTGTTCAGAGCCTCCAGATACCTTTTTTATAAAAAGAAGTCTG
AAAATCATTATGGTATATAATCTATCCTTAACAACCCTTTTTTTATTACAGTGCTAAGAT
GATTTCTGATTAAACAGTTTCTAACTCAACTAGAAGGCTAAAAATGCAGGAATGAAAGAA
AAAACGGAGTACTCATGATGATGCCTTTGAGAAAAATCAGAACATCATATAGGGTGACCT
AGTTTTCAAACCAATAAGCAGTATTGTAATATTAAACGAAAACTGTTCAATCATTTAAAA
GTACTTGTTAAGTACTGCTTTTACAGTTATGACAACTGTTTCTTTCTATGCATATAAATC
AAGCAACCAAATATCTGTAGCCATGGAAATGTCTGACTAGAAATATTTATATTGGATTCT
GAATACAAAATGTCCCTGTGGTAGAAATCTTACTTCTTAGGCCTGGTAAGGTATAATTCC
CAAGTGTACTGTCTACCAGGAAAACAAAAAACCAATAATAAAAAATGAAATGTGAAAATT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACCAGAGATTGCCAGGTTTCCTTTACTTTTGGACCCTGTGATTATCACCAGGAAGT
TTCTCTTCGAGTCCATCTGATGGAATACATTACAAAGCAAGGTTTCACAATCCGCAACAC
CCGAGTGCATCACATGAGTGAGCGGGCCAACGAGAACACAGTGGAGCACAACTGGACTTT
CTGCAGGCTGGCCCGGAAGACCGATGACTGACCTTCAGCCTGGGAGAAGTTCCTACAAAT
GGACTCCCCAAGGAGATTGAAGAGGCTGTTTTTTGTTTGTTTGGTTTTTGTTTTTGTTTT
TTAAATCACAGTGTGAGGATTTTTTTTTTTTTTTTTAATATTTGTATTTATTTGAAGGCA
ATTGGGGACCAGAGGAAGTTTTGTGCTTTAGCAGACTCCTCTTTGTGTGGTTCCCTTCAC
CCTGAGTATGCATGTGCCTGTTCAGAGCCTCCAGATACCTTTTTTATAAAAAGAAGTCTG
AAAATCATTATGGTATATAATCTATCCTTAACAACCCTTTTTTTATTACAGTGCTAAGAT
GATTTCTGATTAAACAGTTTCTAACTCAACTAGAAGGCTAAAAATGCAGGAATGAAAGAA
AAAACGGAGTACTCATGATGATGCCTTTGAGAAAAATCAGAACATCATATAGGGTGACCT
AGTTTTCAAACCAATAAGCAGTATTGTAATATTAAACGAAAACTGTTCAATCATTTAAAA
GTACTTGTTAAGTACTGCTTTTACAGTTATGACAACTGTTTCTTTCTATGCATATAAATC
AAGCAACCAAATATCTGTAGCCATGGAAATGTCTGACTAGAAATATTTATATTGGATTCT
GAATACAAAATGTCCCTGTGGTAGAAATCTTACTTCTTAGGCCTGGTAAGGTATAATTCC
CAAGTGTACTGTCTACCAGGAAAACAAAAAACCAATAATAAAAAATGAAATGTGAAAATT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               434-652, - strand, RNAz p=0.753208

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-652, - strand, RNAz p=0.753208

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-961, gnl|bosTau2|chr22 (32150227-32151176)
               

               
               1-961, gnl|Hg17|chr3 (58462189-58463126)
               

               
               1-961, gnl|Mm7|chr14 (6031453-6032358)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-961, gnl|bosTau2|chr22 (32150227-32151176)
               

               
               1-961, gnl|Hg17|chr3 (58462189-58463126)
               

               
               1-961, gnl|Mm7|chr14 (6031453-6032358)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-961, gnl\|bosTau2\|chr22 (32150227-32151176)
	1-961, gnl\|Hg17\|chr3 (58462189-58463126)
	1-961, gnl\|Mm7\|chr14 (6031453-6032358)

	vin (0.332557)
	ski (0.29347)
	mgp (0.230681)
	tes (0.207814)
	sin (0.174948)
	mcp (0.170648)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	kid (0.129735)
	ebs (0.118301)
	ldo (0.0970026)