Ss1.1-Pig4-TMW8053G19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCCGTCGGCGAGCACCGGCTCAGCAACAAGCTGCTGGCCTGGAGTGGCGTCCTCGAG TGGCAGGAGAAGCGCAGACCCTACTCGGATTCCACCGCGAAGCTGAAGCGGGCACTCCCC TGCCAGGCCTATGTCAACCAGGGCGAGAACCTGGAGACCGACCAGTGGCCGCAGAAGCTG ATCATGCAGCTGATCCCACAGCAGCTGCTGACCACCCTGGGCCCCCTGTTCCGCAACTCC CAGCTGGCGCAGTTCCACTTCACCAACAGAGACTGCGACTCTCTGAAGGGGCTCTGCCGC GTCATGGGCAACGGCTTCGCGGGCTGCATGCTCTTCCCCCACATCTCGCCCTGCGAGGTG CGCGTGCTCATGCTCCTGTACTCGTCCAAGAAGAAGATCTTCATGGGCCTCATCCCCTAC GACCAGAGCGGCTTCGTCAACGCTATCCGGCAGGTCATCACCACCCGCAAACAGGCAGTG GGACCTGGGGGCGTGGCGGGGCCCGTCCAGATCGTCAACAACAAGTTCCTGGCCTGGAGC GGAGTCATGGAGTGGCAAGAGCCCAGGCCTGAGCCCAACAGCCGGTCTAAGAGGTGGCTG CCGTCGCATGTCTACGTGAACCAAGGGGAGATCCTGCGGACCGAGCAGTGGCCCCGGAAG CTGTACATGCAGCTCATCCCGCAGCAGCTGCTGACCACGCTGGTGCCCCTCTTCCGGAAC TCCCGCCTGGTGCAGTTCCACTTCACCAAGGACCTGGAGACGCTGAAGAGCCTGTGCCGC ATCATGGACAACGGCTTCGCGGGCTGCGTGCACTTCTCCTACAAGGCCTCGTGCGAGGTG CGCGTGCTCATGCTCCTGTACTCCTCGGAGAAGAAGATCTTCATCGGCCTCATCCCCCAC GACCAGGGCAACTTCCTCAATGGCATCCGGCGTGTTATCGCCAACCAGCAGCAGGTCCTG CAGCGGAACCTGGAACAGGAGCAGCAGCAGCGAGGGATGGGGGGGTAGTGGCCACTCCCC CGGGCTGGGCCTCTCCAGGAGTCACAGAAGAGGCCCCCGCCAAGACTGGTCAGTGCTTCT GAGCAGGGGACCCTGGGGACCACAACTGCCCAGCGAGATGGAGGACAGCGTCCTGAGATG TCTCCAAGGACGGTTCCCCCCCCCCCCCCGTATGTTATGTTTCCCTATTAAAGTCTTTTA AAAGTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCCGTCGGCGAGCACCGGCTCAGCAACAAGCTGCTGGCCTGGAGTGGCGTCCTCGAG TGGCAGGAGAAGCGCAGACCCTACTCGGATTCCACCGCGAAGCTGAAGCGGGCACTCCCC TGCCAGGCCTATGTCAACCAGGGCGAGAACCTGGAGACCGACCAGTGGCCGCAGAAGCTG ATCATGCAGCTGATCCCACAGCAGCTGCTGACCACCCTGGGCCCCCTGTTCCGCAACTCC CAGCTGGCGCAGTTCCACTTCACCAACAGAGACTGCGACTCTCTGAAGGGGCTCTGCCGC GTCATGGGCAACGGCTTCGCGGGCTGCATGCTCTTCCCCCACATCTCGCCCTGCGAGGTG CGCGTGCTCATGCTCCTGTACTCGTCCAAGAAGAAGATCTTCATGGGCCTCATCCCCTAC GACCAGAGCGGCTTCGTCAACGCTATCCGGCAGGTCATCACCACCCGCAAACAGGCAGTG GGACCTGGGGGCGTGGCGGGGCCCGTCCAGATCGTCAACAACAAGTTCCTGGCCTGGAGC GGAGTCATGGAGTGGCAAGAGCCCAGGCCTGAGCCCAACAGCCGGTCTAAGAGGTGGCTG CCGTCGCATGTCTACGTGAACCAAGGGGAGATCCTGCGGACCGAGCAGTGGCCCCGGAAG CTGTACATGCAGCTCATCCCGCAGCAGCTGCTGACCACGCTGGTGCCCCTCTTCCGGAAC TCCCGCCTGGTGCAGTTCCACTTCACCAAGGACCTGGAGACGCTGAAGAGCCTGTGCCGC ATCATGGACAACGGCTTCGCGGGCTGCGTGCACTTCTCCTACAAGGCCTCGTGCGAGGTG CGCGTGCTCATGCTCCTGTACTCCTCGGAGAAGAAGATCTTCATCGGCCTCATCCCCCAC GACCAGGGCAACTTCCTCAATGGCATCCGGCGTGTTATCGCCAACCAGCAGCAGGTCCTG CAGCGGAACCTGGAACAGGAGCAGCAGCAGCGAGGGATGGGGGGGTAGTGGCCACTCCCC CGGGCTGGGCCTCTCCAGGAGTCACAGAAGAGGCCCCCGCCAAGACTGGTCAGTGCTTCT GAGCAGGGGACCCTGGGGACCACAACTGCCCAGCGAGATGGAGGACAGCGTCCTGAGATG TCTCCAAGGACGGTTCCCCCCCCCCCCCCGTATGTTATGTTTCCCTATTAAAGTCTTTTA AAAGTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 319-490, gnl|bosTau2|chr18 (48892377-48892545) | |
| 319-490, gnl|Hg17|chr19 (55052044-55052229) | |
| 319-490, gnl|Mm7|chr7 (41040149-41039979) | |
| 688-797, gnl|bosTau2|chr18 (48893413-48893522) | |
| 688-797, gnl|canFam2|chr1 (109592795-109592691) | |
| 688-797, gnl|dasNov1|scaffold_222879 (431-324) | |
| 688-797, gnl|echTel1|scaffold_292376 (992-888) | |
| 688-797, gnl|fr1|chrUn (262489571-262489483) | |
| 688-797, gnl|Hg17|chr19 (55053612-55053721) | |
| 688-797, gnl|hg17|chr3 (121509180-121509283) | |
| 688-797, gnl|mm7|chr7 (41039010-41038906) | |
| 688-797, gnl|Mm7|chr7 (41039015-41038906) | |
| 688-797, gnl|monDom2|scaffold_105 (3961275-3961168) | |
| 688-797, gnl|oryCun1|scaffold_137376 (1060-1169) | |
| 688-797, gnl|panTro1|chr2 (123236890-123236993) | |
| 688-797, gnl|rheMac2|chr2 (40368904-40369008) | |
| 688-797, gnl|rn3|chr1 (95415397-95415293) | |
| 688-797, gnl|tetNig1|chrUn_random (80834457-80834564) | |
| 799-1003, gnl|bosTau2|chr18 (48894722-48894926) | |
| 799-1003, gnl|canFam2|chr1 (109591223-109591073) | |
| 799-1003, gnl|danRer3|chr3 (24708497-24708358) | |
| 799-1003, gnl|dasNov1|scaffold_185716 (7545-7395) | |
| 799-1003, gnl|echTel1|scaffold_291290 (354-504) | |
| 799-1003, gnl|fr1|chrUn (262489482-262489328) | |
| 799-1003, gnl|galGal2|chrUn (64140256-64140406) | |
| 799-1003, gnl|Hg17|chr19 (55055055-55055265) | |
| 799-1003, gnl|hg17|chr3 (121509284-121509434) | |
| 799-1003, gnl|loxAfr1|scaffold_105761 (716-566) | |
| 799-1003, gnl|mm7|chr7 (41038254-41038105) | |
| 799-1003, gnl|Mm7|chr7 (41038254-41038051) | |
| 799-1003, gnl|monDom2|scaffold_105 (3961074-3960924) | |
| 799-1003, gnl|oryCun1|scaffold_137376 (1170-1319) | |
| 799-1003, gnl|panTro1|chr2 (123236994-123237152) | |
| 799-1003, gnl|rheMac2|chr2 (40369009-40369153) | |
| 799-1003, gnl|rn3|chr1 (95414668-95414519) | |
| 799-1003, gnl|xenTro1|scaffold_98 (2245337-2245487) | |
| 1070-1204, gnl|bosTau2|chr18 (48895271-48895396) | |
| 1070-1204, gnl|canFam2|chr1 (109590605-109590479) | |
| 1070-1204, gnl|canFam2|chr22 (3355133-3355213) | |
| 1070-1204, gnl|dasNov1|scaffold_204634 (665-554) | |
| 1070-1204, gnl|dasNov1|scaffold_204634 (681-559) | |
| 1070-1204, gnl|hg17|chr19 (55055683-55055807) | |
| 1070-1204, gnl|Hg17|chr19 (55055684-55055807) | |
| 1070-1204, gnl|hg17|chr21 (25847570-25847683) | |
| 1070-1204, gnl|mm7|chr7 (41037702-41037635) | |
| 1070-1204, gnl|mm7|chr7 (41037718-41037596) | |
| 1070-1204, gnl|Mm7|chr7 (41037715-41037593) | |
| 1070-1204, gnl|panTro1|chr2 (123237271-123237395) | |
| 1070-1204, gnl|panTro1|chr22 (25820184-25820297) | |
| 1070-1204, gnl|rheMac2|chr19 (56139727-56139851) | |
| 1070-1204, gnl|rheMac2|chr3 (21118336-21118223) | |
| 1070-1204, gnl|rn3|chr1 (95414121-95414014) | |
| 1070-1204, gnl|rn3|chr1 (95414137-95414015) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 319-490, gnl|bosTau2|chr18 (48892377-48892545) | |
| 319-490, gnl|Hg17|chr19 (55052044-55052229) | |
| 319-490, gnl|Mm7|chr7 (41040149-41039979) | |
| 688-797, gnl|bosTau2|chr18 (48893413-48893522) | |
| 688-797, gnl|canFam2|chr1 (109592795-109592691) | |
| 688-797, gnl|dasNov1|scaffold_222879 (431-324) | |
| 688-797, gnl|echTel1|scaffold_292376 (992-888) | |
| 688-797, gnl|fr1|chrUn (262489571-262489483) | |
| 688-797, gnl|Hg17|chr19 (55053612-55053721) | |
| 688-797, gnl|hg17|chr3 (121509180-121509283) | |
| 688-797, gnl|mm7|chr7 (41039010-41038906) | |
| 688-797, gnl|Mm7|chr7 (41039015-41038906) | |
| 688-797, gnl|monDom2|scaffold_105 (3961275-3961168) | |
| 688-797, gnl|oryCun1|scaffold_137376 (1060-1169) | |
| 688-797, gnl|panTro1|chr2 (123236890-123236993) | |
| 688-797, gnl|rheMac2|chr2 (40368904-40369008) | |
| 688-797, gnl|rn3|chr1 (95415397-95415293) | |
| 688-797, gnl|tetNig1|chrUn_random (80834457-80834564) | |
| 799-1003, gnl|bosTau2|chr18 (48894722-48894926) | |
| 799-1003, gnl|canFam2|chr1 (109591223-109591073) | |
| 799-1003, gnl|danRer3|chr3 (24708497-24708358) | |
| 799-1003, gnl|dasNov1|scaffold_185716 (7545-7395) | |
| 799-1003, gnl|echTel1|scaffold_291290 (354-504) | |
| 799-1003, gnl|fr1|chrUn (262489482-262489328) | |
| 799-1003, gnl|galGal2|chrUn (64140256-64140406) | |
| 799-1003, gnl|Hg17|chr19 (55055055-55055265) | |
| 799-1003, gnl|hg17|chr3 (121509284-121509434) | |
| 799-1003, gnl|loxAfr1|scaffold_105761 (716-566) | |
| 799-1003, gnl|mm7|chr7 (41038254-41038105) | |
| 799-1003, gnl|Mm7|chr7 (41038254-41038051) | |
| 799-1003, gnl|monDom2|scaffold_105 (3961074-3960924) | |
| 799-1003, gnl|oryCun1|scaffold_137376 (1170-1319) | |
| 799-1003, gnl|panTro1|chr2 (123236994-123237152) | |
| 799-1003, gnl|rheMac2|chr2 (40369009-40369153) | |
| 799-1003, gnl|rn3|chr1 (95414668-95414519) | |
| 799-1003, gnl|xenTro1|scaffold_98 (2245337-2245487) | |
| 1070-1204, gnl|bosTau2|chr18 (48895271-48895396) | |
| 1070-1204, gnl|canFam2|chr1 (109590605-109590479) | |
| 1070-1204, gnl|canFam2|chr22 (3355133-3355213) | |
| 1070-1204, gnl|dasNov1|scaffold_204634 (665-554) | |
| 1070-1204, gnl|dasNov1|scaffold_204634 (681-559) | |
| 1070-1204, gnl|hg17|chr19 (55055683-55055807) | |
| 1070-1204, gnl|Hg17|chr19 (55055684-55055807) | |
| 1070-1204, gnl|hg17|chr21 (25847570-25847683) | |
| 1070-1204, gnl|mm7|chr7 (41037702-41037635) | |
| 1070-1204, gnl|mm7|chr7 (41037718-41037596) | |
| 1070-1204, gnl|Mm7|chr7 (41037715-41037593) | |
| 1070-1204, gnl|panTro1|chr2 (123237271-123237395) | |
| 1070-1204, gnl|panTro1|chr22 (25820184-25820297) | |
| 1070-1204, gnl|rheMac2|chr19 (56139727-56139851) | |
| 1070-1204, gnl|rheMac2|chr3 (21118336-21118223) | |
| 1070-1204, gnl|rn3|chr1 (95414121-95414014) | |
| 1070-1204, gnl|rn3|chr1 (95414137-95414015) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ecc (0.345105) | |
| fce (0.271592) | |
| ese (0.253004) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ecc (0.345105) | |
| fce (0.271592) | |
| ese (0.253004) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |