Non-Coding RNA Search

Ss1.1-Pig4-TMW8053H02.3

Sequence:


               
               GAACGCCGAAATCACGCTGCAGATGGTGCAGTACAAGAATCGACAGGCCATCCTGGCGGT
CAAGTCCACGCGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCCCCGCAGCCGCAGCT
TCAACCCCAAGCCCAACCCCAGCCTCAGCCCCAGCCTCAGCCCCAGTCCCAAGCCCAGCC
ACAGCTCCAACCCAGGCCCCAGCCACAACCCAAGCCTCAGCCGCAGCAGATCCACCCTCA
TCCGCATCCGCACCCGCACCCGTATCCGCATCCACACTCGCATCCGCATCCACACGCACA
CCAACAACCGCTTTCGCAGCCGCACGGTCACCGGCTTCTCCGCAGCACCTCCAACTCTGC
CTGAAGAGGGCAGCACCTGGGCCAGACAAGGTTTTGAGGACTTGAGGAAGTGGGACAAGC
ACCTTTCTATTGTCTTCACTTGGATCGAAAGCAAAACAGTCTCCCAGTCCGCAGCAGATC
AAGTAGTTTGGACATAACCCGACTGATAACTTGTGATTTCACTTAGTTTTCTGCATACTC
TTCATCACAATGCAAGAAATGATCTCGAGTCCAGAAGGCTTTATTTATGAACCTTTGAAA
AGGATCTTCCAGTATGATGGACCTTCTAGGAGCGATGATGTACTGTAATTTTATTTTAAT
GTATTTTGATTTATGATTATTTATTAGGTTTTTTTTTAAAATGCTTGTTCTAAGACATTT
CTGAATGTAGGCCATTTTTCAAAAAAGAAACTTTATTTTCAAAAACCTGCTCCCTAGTAA
GTTCTAATCTTGGGAAAGAAGAAAGTAAAAGGGTGGTGGAGGGGACACGTTGAGAGTCCA
TTATTCCTAGGGCATTTTCAGAAGGTCTGACACTTCATTGTTATACCAGGTAGTTGAAAT
TAAACTCTCTGATGTTACTTTTTTTTTTTTTTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGCCGAAATCACGCTGCAGATGGTGCAGTACAAGAATCGACAGGCCATCCTGGCGGT
CAAGTCCACGCGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCCCCGCAGCCGCAGCT
TCAACCCCAAGCCCAACCCCAGCCTCAGCCCCAGCCTCAGCCCCAGTCCCAAGCCCAGCC
ACAGCTCCAACCCAGGCCCCAGCCACAACCCAAGCCTCAGCCGCAGCAGATCCACCCTCA
TCCGCATCCGCACCCGCACCCGTATCCGCATCCACACTCGCATCCGCATCCACACGCACA
CCAACAACCGCTTTCGCAGCCGCACGGTCACCGGCTTCTCCGCAGCACCTCCAACTCTGC
CTGAAGAGGGCAGCACCTGGGCCAGACAAGGTTTTGAGGACTTGAGGAAGTGGGACAAGC
ACCTTTCTATTGTCTTCACTTGGATCGAAAGCAAAACAGTCTCCCAGTCCGCAGCAGATC
AAGTAGTTTGGACATAACCCGACTGATAACTTGTGATTTCACTTAGTTTTCTGCATACTC
TTCATCACAATGCAAGAAATGATCTCGAGTCCAGAAGGCTTTATTTATGAACCTTTGAAA
AGGATCTTCCAGTATGATGGACCTTCTAGGAGCGATGATGTACTGTAATTTTATTTTAAT
GTATTTTGATTTATGATTATTTATTAGGTTTTTTTTTAAAATGCTTGTTCTAAGACATTT
CTGAATGTAGGCCATTTTTCAAAAAAGAAACTTTATTTTCAAAAACCTGCTCCCTAGTAA
GTTCTAATCTTGGGAAAGAAGAAAGTAAAAGGGTGGTGGAGGGGACACGTTGAGAGTCCA
TTATTCCTAGGGCATTTTCAGAAGGTCTGACACTTCATTGTTATACCAGGTAGTTGAAAT
TAAACTCTCTGATGTTACTTTTTTTTTTTTTTGGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WV24_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WV24_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-392, gnl|bosTau2|chr5 (1961026-1960626)
               

               
               1-392, gnl|Hg17|chr12 (74710973-74710555)
               

               
               1-392, gnl|Mm7|chr10 (110969182-110969630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr5 (1961026-1960626)
               

               
               1-392, gnl|Hg17|chr12 (74710973-74710555)
               

               
               1-392, gnl|Mm7|chr10 (110969182-110969630)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lyg (0.532411)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.532411)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	1-392, gnl\|bosTau2\|chr5 (1961026-1960626)
	1-392, gnl\|Hg17\|chr12 (74710973-74710555)
	1-392, gnl\|Mm7\|chr10 (110969182-110969630)

	lyg (0.532411)
	sug (0.254582)
	mgp (0.230681)
	mgm (0.180343)
	sto (0.179824)
	rec (0.17307)
	fco (0.157208)
	che (0.136314)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)