Ss1.1-Pig4-TMW8053H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGTACCCTTTAGCACGCAAGCGCAGAAGGCTCTTACGTCAGCTGTGTTGTGGCAATGG TGGAGAAGAAAACTTCGGTTCGCTCCCAGGACCCTGGACAGCGGCGGGTGCTGGACCGAG CGGCCCGGCAGCGCCGCATCAACAGGCAGCTCGAGGCCTTGGAGAATGACAACTTCCAAG ATGACCCGCACGCAGGCCTCCCCCAGCTCGGCAAGAGGCTGCCTCAGTTTGACGATGATG CAGACACTGGAAAGAAAAAGAAAAAAACTCGAGGTGATCATTTTAAACTTCGCTTCCGAA AAAACTTTCAGGCCTTGCTGGAGGAGCAGAACCTGAGCGTGGCTGAGGGCCCCAACTACC TGACGGCCTGTGCAGGACCCCCATCCCGGCCCCAGCGCCCCTTCTGCGCTGTCTGTGGCT TCCCCTCCCCCTACACCTGTGTCAGCTGTGGTGCCCGGTACTGCACGGTGCGCTGTCTGG GCACCCACCAGGAGACCCGGTGCCTGAAGTGGACTGTGTGACCCTGGGCATCCCTGGAGA GGAAGGCCCTCTGCCTCGCCTGGCCTCGGAGAGGGCATCCCTGAAAGAGGAGCCCACTGA CGCGTGTGTCATACCCTCCAGGGAGGCCAGCCCTCCGAGTGCTGTTGTAATAAAAGGCCC CATGCAAGGAGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGTACCCTTTAGCACGCAAGCGCAGAAGGCTCTTACGTCAGCTGTGTTGTGGCAATGG TGGAGAAGAAAACTTCGGTTCGCTCCCAGGACCCTGGACAGCGGCGGGTGCTGGACCGAG CGGCCCGGCAGCGCCGCATCAACAGGCAGCTCGAGGCCTTGGAGAATGACAACTTCCAAG ATGACCCGCACGCAGGCCTCCCCCAGCTCGGCAAGAGGCTGCCTCAGTTTGACGATGATG CAGACACTGGAAAGAAAAAGAAAAAAACTCGAGGTGATCATTTTAAACTTCGCTTCCGAA AAAACTTTCAGGCCTTGCTGGAGGAGCAGAACCTGAGCGTGGCTGAGGGCCCCAACTACC TGACGGCCTGTGCAGGACCCCCATCCCGGCCCCAGCGCCCCTTCTGCGCTGTCTGTGGCT TCCCCTCCCCCTACACCTGTGTCAGCTGTGGTGCCCGGTACTGCACGGTGCGCTGTCTGG GCACCCACCAGGAGACCCGGTGCCTGAAGTGGACTGTGTGACCCTGGGCATCCCTGGAGA GGAAGGCCCTCTGCCTCGCCTGGCCTCGGAGAGGGCATCCCTGAAAGAGGAGCCCACTGA CGCGTGTGTCATACCCTCCAGGGAGGCCAGCCCTCCGAGTGCTGTTGTAATAAAAGGCCC CATGCAAGGAGGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 78-250, gnl|bosTau2|chr25 (30491625-30491797) | |
| 78-250, gnl|canFam2|chr6 (11664701-11664540) | |
| 78-250, gnl|danRer3|chr5 (37059425-37059579) | |
| 78-250, gnl|dasNov1|scaffold_69675 (4053-4214) | |
| 78-250, gnl|echTel1|scaffold_255126 (1920-1759) | |
| 78-250, gnl|Hg17|chr7 (100459319-100459491) | |
| 78-250, gnl|hg17|chr8 (143936760-143936921) | |
| 78-250, gnl|mm7|chr5 (135955974-135955813) | |
| 78-250, gnl|Mm7|chr5 (135955960-135955788) | |
| 78-250, gnl|monDom2|scaffold_66 (3171331-3171492) | |
| 78-250, gnl|oryCun1|scaffold_166620 (592-443) | |
| 78-250, gnl|panTro1|chr7 (147248956-147249117) | |
| 78-250, gnl|rheMac2|chr8 (145408008-145408169) | |
| 78-250, gnl|rn3|chr6 (17753102-17753245) | |
| 78-250, gnl|tetNig1|chrUn_random (64057746-64057462) | |
| 78-250, gnl|xenTro1|scaffold_10 (3119684-3119830) | |
| 326-502, gnl|bosTau2|chr25 (30492443-30492619) | |
| 326-502, gnl|canFam2|chr6 (11663299-11663133) | |
| 326-502, gnl|danRer3|chr5 (37062542-37062708) | |
| 326-502, gnl|dasNov1|scaffold_69675 (5275-5441) | |
| 326-502, gnl|echTel1|scaffold_255126 (911-745) | |
| 326-502, gnl|fr1|chrUn (298670145-298670311) | |
| 326-502, gnl|Hg17|chr7 (100460385-100460561) | |
| 326-502, gnl|hg17|chr8 (143937025-143937191) | |
| 326-502, gnl|loxAfr1|scaffold_105736 (7870-7704) | |
| 326-502, gnl|mm7|chr5 (135953598-135953432) | |
| 326-502, gnl|Mm7|chr5 (135953601-135953425) | |
| 326-502, gnl|monDom2|scaffold_66 (3173484-3173650) | |
| 326-502, gnl|panTro1|chr7 (147249222-147249388) | |
| 326-502, gnl|rheMac2|chr8 (145408273-145408439) | |
| 326-502, gnl|rn3|chr6 (17753349-17753498) | |
| 326-502, gnl|tetNig1|chrUn_random (64057215-64057049) | |
| 326-502, gnl|xenTro1|scaffold_10 (3120781-3120947) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-250, gnl|bosTau2|chr25 (30491625-30491797) | |
| 78-250, gnl|canFam2|chr6 (11664701-11664540) | |
| 78-250, gnl|danRer3|chr5 (37059425-37059579) | |
| 78-250, gnl|dasNov1|scaffold_69675 (4053-4214) | |
| 78-250, gnl|echTel1|scaffold_255126 (1920-1759) | |
| 78-250, gnl|Hg17|chr7 (100459319-100459491) | |
| 78-250, gnl|hg17|chr8 (143936760-143936921) | |
| 78-250, gnl|mm7|chr5 (135955974-135955813) | |
| 78-250, gnl|Mm7|chr5 (135955960-135955788) | |
| 78-250, gnl|monDom2|scaffold_66 (3171331-3171492) | |
| 78-250, gnl|oryCun1|scaffold_166620 (592-443) | |
| 78-250, gnl|panTro1|chr7 (147248956-147249117) | |
| 78-250, gnl|rheMac2|chr8 (145408008-145408169) | |
| 78-250, gnl|rn3|chr6 (17753102-17753245) | |
| 78-250, gnl|tetNig1|chrUn_random (64057746-64057462) | |
| 78-250, gnl|xenTro1|scaffold_10 (3119684-3119830) | |
| 326-502, gnl|bosTau2|chr25 (30492443-30492619) | |
| 326-502, gnl|canFam2|chr6 (11663299-11663133) | |
| 326-502, gnl|danRer3|chr5 (37062542-37062708) | |
| 326-502, gnl|dasNov1|scaffold_69675 (5275-5441) | |
| 326-502, gnl|echTel1|scaffold_255126 (911-745) | |
| 326-502, gnl|fr1|chrUn (298670145-298670311) | |
| 326-502, gnl|Hg17|chr7 (100460385-100460561) | |
| 326-502, gnl|hg17|chr8 (143937025-143937191) | |
| 326-502, gnl|loxAfr1|scaffold_105736 (7870-7704) | |
| 326-502, gnl|mm7|chr5 (135953598-135953432) | |
| 326-502, gnl|Mm7|chr5 (135953601-135953425) | |
| 326-502, gnl|monDom2|scaffold_66 (3173484-3173650) | |
| 326-502, gnl|panTro1|chr7 (147249222-147249388) | |
| 326-502, gnl|rheMac2|chr8 (145408273-145408439) | |
| 326-502, gnl|rn3|chr6 (17753349-17753498) | |
| 326-502, gnl|tetNig1|chrUn_random (64057215-64057049) | |
| 326-502, gnl|xenTro1|scaffold_10 (3120781-3120947) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cli (0.611247) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |