Ss1.1-Pig4-TMW8053H06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGAGCAGAGCTGGGTCTCTGGACGTAGTTTTCATCCTGGGGGAAGGGGCCGTGGAG TTTGAGAGGCTGTGGAAGAGATGGCGGCCTCGGCGCGGGAAGATGGCGGCCGCGGGCAGG AGCACGGACGGCGGGGCTGCGAGCACTATGACAGAGGATGCCTCCTGAAGGCACCTTGCT GTGACAAGCTTTATACTTGCCGGTTGTGTCATGATAGCAATGAAGATCATCAGCTAGATC GCTTTAAAGTAAAGGAAGTGCAGTGCATAAACTGTGAAAAAATTCAACATGCACAACAGA TTTGTGAAGAATGTAGCACATTGTTTGGAGAATATTATTGCAGTATATGCCATCTCTTTG ACAAAGATAAGAAACAGTATCATTGTGAAAACTGTGGAATTTGTAGGATTGGTCCAAAGG AAGATTTTTTCCACTGTTTGAAATGTAACTTATGCCTAGCAATGAATCTCCAAGGAAAGC ACAAGTGTATTGAAAATGTTTCCCGGCAGAATTGTCCAATATGTTTGGAGGACATTCATA CATCCCGTATTGTTGCTCACGTCTTGCCATGTGGACATCTTTTACATAGAACATGTTATG AAGAAATGTTGAAAGAAGGCTACAGATGTCCATTATGTATGCACTCTGCTTTAGATATGA CTAGGTACTGGAGACAGCTGGATGATGAGGTAGCACAGACTCCTATGCCATCAGAGTATC AGAACATGACTGTGGATATTCTCTGCAATGATTGCAATGGAAGATCTACAGTCCAGTTCC ATATATTAGGCATGAAATGTAACATTTGTGAATCGTACAATACTGCTCAGGCTGGAGGAT GTAGAATTTCATTAGATCAGCAGTGAGCAGCCTGTGCTTCACTGGAAAACTCAGCATTTT CTGATACAGAAAAAGGCTATCTTTTTGTCAATGCGTCAATCTATGCAGTAGAGCTGATGT GTTTTGTACTAGTGTCACAGCATAAAATCATATTACAAGACTTAAGGATTCAGGGTCTCT TTATAGAAGAGAAAGCCACCATGCTTGTGTTTTGATTGGAAATTGCTTTGGTGTTAGTTG TTTGGAAGTCAATGATGTTTGCCACTGAAATTTGCATTCATAAATGTATTATACTTCTAT GGACCTTTGCTTTAAGTGACACTATGCACACAGAATTCATTTCTAGTTCTTGATAGAACT GTACTTAATTCTCAGTATTATTCTTGACTTCTTAAGGGCTGCACTATAATGAGAATGTGT TCTATCTTACTGTTAAAATCTAATTACATATACTTTAGAATTTTCTAAGACAGTCCTGTA AATGTGAATTTTGATGTAATAACTGCTAATAAAATTATATGGAAACAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGAGCAGAGCTGGGTCTCTGGACGTAGTTTTCATCCTGGGGGAAGGGGCCGTGGAG TTTGAGAGGCTGTGGAAGAGATGGCGGCCTCGGCGCGGGAAGATGGCGGCCGCGGGCAGG AGCACGGACGGCGGGGCTGCGAGCACTATGACAGAGGATGCCTCCTGAAGGCACCTTGCT GTGACAAGCTTTATACTTGCCGGTTGTGTCATGATAGCAATGAAGATCATCAGCTAGATC GCTTTAAAGTAAAGGAAGTGCAGTGCATAAACTGTGAAAAAATTCAACATGCACAACAGA TTTGTGAAGAATGTAGCACATTGTTTGGAGAATATTATTGCAGTATATGCCATCTCTTTG ACAAAGATAAGAAACAGTATCATTGTGAAAACTGTGGAATTTGTAGGATTGGTCCAAAGG AAGATTTTTTCCACTGTTTGAAATGTAACTTATGCCTAGCAATGAATCTCCAAGGAAAGC ACAAGTGTATTGAAAATGTTTCCCGGCAGAATTGTCCAATATGTTTGGAGGACATTCATA CATCCCGTATTGTTGCTCACGTCTTGCCATGTGGACATCTTTTACATAGAACATGTTATG AAGAAATGTTGAAAGAAGGCTACAGATGTCCATTATGTATGCACTCTGCTTTAGATATGA CTAGGTACTGGAGACAGCTGGATGATGAGGTAGCACAGACTCCTATGCCATCAGAGTATC AGAACATGACTGTGGATATTCTCTGCAATGATTGCAATGGAAGATCTACAGTCCAGTTCC ATATATTAGGCATGAAATGTAACATTTGTGAATCGTACAATACTGCTCAGGCTGGAGGAT GTAGAATTTCATTAGATCAGCAGTGAGCAGCCTGTGCTTCACTGGAAAACTCAGCATTTT CTGATACAGAAAAAGGCTATCTTTTTGTCAATGCGTCAATCTATGCAGTAGAGCTGATGT GTTTTGTACTAGTGTCACAGCATAAAATCATATTACAAGACTTAAGGATTCAGGGTCTCT TTATAGAAGAGAAAGCCACCATGCTTGTGTTTTGATTGGAAATTGCTTTGGTGTTAGTTG TTTGGAAGTCAATGATGTTTGCCACTGAAATTTGCATTCATAAATGTATTATACTTCTAT GGACCTTTGCTTTAAGTGACACTATGCACACAGAATTCATTTCTAGTTCTTGATAGAACT GTACTTAATTCTCAGTATTATTCTTGACTTCTTAAGGGCTGCACTATAATGAGAATGTGT TCTATCTTACTGTTAAAATCTAATTACATATACTTTAGAATTTTCTAAGACAGTCCTGTA AATGTGAATTTTGATGTAATAACTGCTAATAAAATTATATGGAAACAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 169-291, gnl|bosTau2|chr6 (50427254-50427132) | |
| 169-291, gnl|Hg17|chr4 (76791687-76791565) | |
| 169-291, gnl|Mm7|chr5 (91945246-91945124) | |
| 617-737, gnl|bosTau2|chr6 (50417256-50417136) | |
| 617-737, gnl|canFam2|chr32 (3034226-3034359) | |
| 617-737, gnl|danRer3|chr5 (1090911-1091043) | |
| 617-737, gnl|dasNov1|scaffold_15396 (6705-6820) | |
| 617-737, gnl|echTel1|scaffold_247041 (3591-3458) | |
| 617-737, gnl|fr1|chrUn (253773413-253773546) | |
| 617-737, gnl|galGal2|chr4 (35073790-35073657) | |
| 617-737, gnl|hg17|chr4 (76772966-76773099) | |
| 617-737, gnl|Hg17|chr4 (76773090-76772970) | |
| 617-737, gnl|loxAfr1|scaffold_17409 (37994-37871) | |
| 617-737, gnl|mm7|chr5 (91939064-91939197) | |
| 617-737, gnl|Mm7|chr5 (91939188-91939068) | |
| 617-737, gnl|monDom2|scaffold_32 (20181534-20181667) | |
| 617-737, gnl|oryCun1|scaffold_91067 (6236-6369) | |
| 617-737, gnl|panTro1|chr3 (56960252-56960119) | |
| 617-737, gnl|rheMac2|chr5 (54100037-54099904) | |
| 617-737, gnl|rn3|chr14 (17697563-17697430) | |
| 617-737, gnl|tetNig1|chr12 (11507001-11506868) | |
| 617-737, gnl|xenTro1|scaffold_424 (56745-56883) | |
| 886-1380, gnl|bosTau2|chr25 (19289608-19290121) | |
| 886-1380, gnl|Hg17|chr4 (76764907-76764394) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-291, gnl|bosTau2|chr6 (50427254-50427132) | |
| 169-291, gnl|Hg17|chr4 (76791687-76791565) | |
| 169-291, gnl|Mm7|chr5 (91945246-91945124) | |
| 617-737, gnl|bosTau2|chr6 (50417256-50417136) | |
| 617-737, gnl|canFam2|chr32 (3034226-3034359) | |
| 617-737, gnl|danRer3|chr5 (1090911-1091043) | |
| 617-737, gnl|dasNov1|scaffold_15396 (6705-6820) | |
| 617-737, gnl|echTel1|scaffold_247041 (3591-3458) | |
| 617-737, gnl|fr1|chrUn (253773413-253773546) | |
| 617-737, gnl|galGal2|chr4 (35073790-35073657) | |
| 617-737, gnl|hg17|chr4 (76772966-76773099) | |
| 617-737, gnl|Hg17|chr4 (76773090-76772970) | |
| 617-737, gnl|loxAfr1|scaffold_17409 (37994-37871) | |
| 617-737, gnl|mm7|chr5 (91939064-91939197) | |
| 617-737, gnl|Mm7|chr5 (91939188-91939068) | |
| 617-737, gnl|monDom2|scaffold_32 (20181534-20181667) | |
| 617-737, gnl|oryCun1|scaffold_91067 (6236-6369) | |
| 617-737, gnl|panTro1|chr3 (56960252-56960119) | |
| 617-737, gnl|rheMac2|chr5 (54100037-54099904) | |
| 617-737, gnl|rn3|chr14 (17697563-17697430) | |
| 617-737, gnl|tetNig1|chr12 (11507001-11506868) | |
| 617-737, gnl|xenTro1|scaffold_424 (56745-56883) | |
| 886-1380, gnl|bosTau2|chr25 (19289608-19290121) | |
| 886-1380, gnl|Hg17|chr4 (76764907-76764394) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| isp (0.300752) | |
| liv (0.292569) | |
| lin (0.291206) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| isp (0.300752) | |
| liv (0.292569) | |
| lin (0.291206) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| spc (0.113366) | |
| ldo (0.0970026) |