Non-Coding RNA Search

Ss1.1-Pig4-TMW8053H07.3

Sequence:


               
               TCTCCAGAAGACAGGTTACTGAACATAGTCTCTTACGTGACACTAGTGGAAAGCAAAATA
AATGAATGTTTAGATGAGGGCTTATATGGGAACTAGAGATAGAAAAAAGAAAGGCTTTAG
GGAGGAAAATGGAAGAATAACTTAAATGTGAGAAAAGATGCCTGTGGGAAGCATATTATT
CCATGACTGAGTTGTCATTTTAACTTGACTCACACTGAGTGAGGCCTCTCCTAGATACCT
CTGAGGCTTGCCCCCAGCCTCTGTCCCTTCACCCAGTGATGGCATTCTTATCAGGGATGC
CTTTGGGGAATGGTGGCAAAACTGGAAGGTCTAAAGTCTCCGTATCAGATATCCTTGATA
ATCATATATTTTTAGAATTTATGTATTTAAAAAATAGGCTATATAAACATGATTTTAAAA
GTTTAAAAGCAATATTTTCCTGTTTTTTAAAATTCAGTGATAATACCTAAGGTTTTTCAT
GATATGGAGATTTCTAGTATTTCAGAGTCTATAATCTTACTTACCATAATACTTATATTT
TATTAGTATTAGTATTAGAGCAATATATAAATTAGCATAAATTGTTGTAAAACAAGGCAG
ACGAGCAACAAAGGTGCTTTTTATTATAATGTTAATTATAAAATTGGGCCAACAACCAAT
TAAAAAGGAAAATTTTATGATTATTTAGTAAAGCATGTTCAGATAATTTTAATTGCTTTA
AGCAACATTATCATTAGTGAAGTCATTAATAAAGTTATATTTTCTGCAAGATCTTCATAC
TAAATAATGCTCCAGTTTTTGCTTGATCAATCTATAGACTATCTTGATAGATCTTAGTGT
ATAAGTTCCATATAATTCTTTTTTACTGAAGTATAGTTGATTAACAACATTGTGTTTCAG
GTGTACAGCATAGTGATTCAGGGTTTTTTTTACAGATTATATTCCATTATGGGTTATTGC
AAGATGGTATAATTCCCTGTGCTGTACAGTAAGTCTTTGTAGCTTGTCTGTTGTATGTAT
AGTAGTTTGTATCTGTTAATTCCAGACTCCTAATTTGTCCTTCTCCCCTCCCTCTCCCCT
TAAACCACAAGTTTGTTTTCTATGTCTGTGAATGTTTCTGTTTTGTACATTGATTCATTT
GTGTTATTTTTTAGATTCCACATGTAAGTGATAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCAGAAGACAGGTTACTGAACATAGTCTCTTACGTGACACTAGTGGAAAGCAAAATA
AATGAATGTTTAGATGAGGGCTTATATGGGAACTAGAGATAGAAAAAAGAAAGGCTTTAG
GGAGGAAAATGGAAGAATAACTTAAATGTGAGAAAAGATGCCTGTGGGAAGCATATTATT
CCATGACTGAGTTGTCATTTTAACTTGACTCACACTGAGTGAGGCCTCTCCTAGATACCT
CTGAGGCTTGCCCCCAGCCTCTGTCCCTTCACCCAGTGATGGCATTCTTATCAGGGATGC
CTTTGGGGAATGGTGGCAAAACTGGAAGGTCTAAAGTCTCCGTATCAGATATCCTTGATA
ATCATATATTTTTAGAATTTATGTATTTAAAAAATAGGCTATATAAACATGATTTTAAAA
GTTTAAAAGCAATATTTTCCTGTTTTTTAAAATTCAGTGATAATACCTAAGGTTTTTCAT
GATATGGAGATTTCTAGTATTTCAGAGTCTATAATCTTACTTACCATAATACTTATATTT
TATTAGTATTAGTATTAGAGCAATATATAAATTAGCATAAATTGTTGTAAAACAAGGCAG
ACGAGCAACAAAGGTGCTTTTTATTATAATGTTAATTATAAAATTGGGCCAACAACCAAT
TAAAAAGGAAAATTTTATGATTATTTAGTAAAGCATGTTCAGATAATTTTAATTGCTTTA
AGCAACATTATCATTAGTGAAGTCATTAATAAAGTTATATTTTCTGCAAGATCTTCATAC
TAAATAATGCTCCAGTTTTTGCTTGATCAATCTATAGACTATCTTGATAGATCTTAGTGT
ATAAGTTCCATATAATTCTTTTTTACTGAAGTATAGTTGATTAACAACATTGTGTTTCAG
GTGTACAGCATAGTGATTCAGGGTTTTTTTTACAGATTATATTCCATTATGGGTTATTGC
AAGATGGTATAATTCCCTGTGCTGTACAGTAAGTCTTTGTAGCTTGTCTGTTGTATGTAT
AGTAGTTTGTATCTGTTAATTCCAGACTCCTAATTTGTCCTTCTCCCCTCCCTCTCCCCT
TAAACCACAAGTTTGTTTTCTATGTCTGTGAATGTTTCTGTTTTGTACATTGATTCATTT
GTGTTATTTTTTAGATTCCACATGTAAGTGATAGCA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               809-1166, gnl|bosTau2|chr1 (56477841-56477465)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               809-1166, gnl|bosTau2|chr1 (56477841-56477465)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	mga (0.32041)
	tbr (0.308356)
	pla (0.267344)
	fcc (0.197785)
	sag (0.182715)
	lun (0.150489)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	cty (0.10408)