Non-Coding RNA Search

Ss1.1-Pig4-TMW8053H09.3

Sequence:


               
               CCCTGGCACGAAGCTCCCCATGATGTACATCGATGACTGCCTGCGGGCCACCCTGGAGGT
CATGGAGGCGCCGGCGGAGGCCCTCTCCCTGAGGACCTACAACGTCAATGCCATGAGCTT
CACCCCCGCCGAGCTGGCCCAGGAGGTCCTCAAGCACATCCCGGAGTTCCAGATCACCTA
CAATGTGGACTCTGTCCGGCAGGCCATAGCGGATAGTTGGCCAATGAACTTTGACGATAG
CACCGCTCGGAGGGACTGGGGGTGGAAACACGATTTTGACCTCCCGGAGCTGGTGACGAC
GATGTTGAACTTCCATGGTGCCCATAGCAGAGTCGCCCAAGCTAACTGAAGCGCCGGAGG
AAGCGTTCGTGAGTCCTGGGCGGCCGTCCAGGGAAAACTGGAACCTCCCAACCCCCCAAG
GTTCCAGAGCCCAAGGAATCTAGATGATATGGAGTTGAAGGATTGATTGGACTAAATTTT
CGCAGCTCATATTGAACTGCCAGATGGAAAATTGAGTTGGCTTTAGCATTTTCTCAATGC
CGTAGGTTTGGTGGTAGGACTTCTGAATTTTTGCTATTTGCCTAAATGTGTCCTAACACA
CATATCACAGAAGGCGTCAGTCATAATAGTTTCCATGTCCTTAATTACGATGAAGTGACC
ATTTCTGGGAATGTGGAAGTATGTGACATTTGTATTAAACTTAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGCACGAAGCTCCCCATGATGTACATCGATGACTGCCTGCGGGCCACCCTGGAGGT
CATGGAGGCGCCGGCGGAGGCCCTCTCCCTGAGGACCTACAACGTCAATGCCATGAGCTT
CACCCCCGCCGAGCTGGCCCAGGAGGTCCTCAAGCACATCCCGGAGTTCCAGATCACCTA
CAATGTGGACTCTGTCCGGCAGGCCATAGCGGATAGTTGGCCAATGAACTTTGACGATAG
CACCGCTCGGAGGGACTGGGGGTGGAAACACGATTTTGACCTCCCGGAGCTGGTGACGAC
GATGTTGAACTTCCATGGTGCCCATAGCAGAGTCGCCCAAGCTAACTGAAGCGCCGGAGG
AAGCGTTCGTGAGTCCTGGGCGGCCGTCCAGGGAAAACTGGAACCTCCCAACCCCCCAAG
GTTCCAGAGCCCAAGGAATCTAGATGATATGGAGTTGAAGGATTGATTGGACTAAATTTT
CGCAGCTCATATTGAACTGCCAGATGGAAAATTGAGTTGGCTTTAGCATTTTCTCAATGC
CGTAGGTTTGGTGGTAGGACTTCTGAATTTTTGCTATTTGCCTAAATGTGTCCTAACACA
CATATCACAGAAGGCGTCAGTCATAATAGTTTCCATGTCCTTAATTACGATGAAGTGACC
ATTTCTGGGAATGTGGAAGTATGTGACATTTGTATTAAACTTAATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55630212|ref|XP_519604.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55630212|ref|XP_519604.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               364-523, - strand, RNAz p=0.999863

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-523, - strand, RNAz p=0.999863

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               207-708, gnl|bosTau2|chr8 (4196296-4195811)
               

               
               207-708, gnl|Hg17|chr8 (11260499-11260995)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-708, gnl|bosTau2|chr8 (4196296-4195811)
               

               
               207-708, gnl|Hg17|chr8 (11260499-11260995)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               cov (0.132153)

	207-708, gnl\|bosTau2\|chr8 (4196296-4195811)
	207-708, gnl\|Hg17\|chr8 (11260499-11260995)