Non-Coding RNA Search

Ss1.1-Pig4-TMW8053H24.5

Sequence:


               
               AAAATGTTAAATGCTGTACAGAGCAAGTCAGTATTCAGCCTGAATAACTATAAGCTGCTG
TCCATTGAAGAAATGCTTGTCTACAAAGATGTGGAGGACATGATAACTTATAGAGAGCAA
ATTTTTCTGGAAATTGCTTTGAATAGAAAGCAGTCTGTTTTAGAAACATCTTAAATATTT
TATATTTTGCCTTTCTTTATTGAGCAAGATTGCAGATGCAGGAGTTTTCTATAGTCTTGT
TTTTCATTTTTGAAGTACATTAATGAAAATTATATTAACATGGTTACTATGGCATAACAT
TAATAATAAAAAAATACACATTAACCATTTTTGTTGAAAGAACCAAGCTTTAATTTCAGA
AAAGTGAGTTGTTGGATGTTTATCACTCTATATTCATTTTTCTCTTATAAATATGGATTT
GTGGAACATTATTTTGTTTATAAAATAATATAATTGTTTAAAGGTAATTTTGTAAATATA
CCTTAAGAGTCCTATTCATCTTCTTTTAGGATGTGATGCCAATAAAGTTCTAAGTGTTTT
ATTGGCAGTTCTCCCCTCAAATGCATTAGTCCCATTCTGATGAACTACTAGAAACATTAT
TCTGTATGGTCTTCAGAGCACTGTAGGAATACTGTAGAGGTACTTTTTTAGAAACAAATC
CATGGCTGACAAAGTCAGATTAAATCATTCTCATTGTGAGCCTTAATTGATAAATAACTA
GACACAAACCGTTCTGAAATTGATGGTAAATATCAGTTTCATTTACTAATCTTATCAGAA
TGAAATAAAAAATGTATATGTGCGATTGTAGCCTTCTAAACTTGAATATATGTTTGTATA
CCTTAAAATTTTTCCTTCAAGTTCCATCCATAGGATAGCATACACAGGACTCGAGTATCT
GCATGGGGAAGATGTTGGAATAATCATGATTCACTGATAATCATGTCAGTTCATTTTGGA
CATTATTTCCATCCTCCCTTATTAATCCTTTTAACAGAACTATTAAAATTACCAGGTGAA
TTGATTTTAATTTTAATTTTTAAAATTTTCATCCATGTACTGGTAATGATGCTGAAAAGC
AATCAATGGCCGAAAGGTAGGGAACCAGAAAACTAGAATGACTGAGAAAATAAACAGATG
ATAAACAGCTTCAAGAAAATAAAAGTCAGCTGGGATCTCAAATTTTGTGTTCCTATTTTA
GTGTAAGCACATATGTGAAATGTCTTCATATCAAAGTCTAATAATAGAGAATAGATTTAT
AGGGTTTTGTGTTTTCACAAGAATAAATTGAAATAGGAACTGGTCTGTGCCAATTTTATT
TACATGTAATATGAAATTAACTTGTCAACATAAAAATAATTGGTAAGTCAGAAATAATTT
ATTTGCAACCCTCAGTTATATTTATATTTTTTTTCAAGTTTTTTTCCCAGGGAGAAAATT
AAGATACATGATAGCCATTGTTTAGCATTTATTGATTTACTTGCATAGATTTCATAGAAT
ATTATGTATTTGTCACTCATTAAAAGTTCATTGCTGTGTATCTAATTTAATTCTTCTAAG
ATCCCATCATTTATTAAGAATCACCATTATCTTATGTTCTACTAGAGAAAACACTGCTAA
TAAAATATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGTTAAATGCTGTACAGAGCAAGTCAGTATTCAGCCTGAATAACTATAAGCTGCTG
TCCATTGAAGAAATGCTTGTCTACAAAGATGTGGAGGACATGATAACTTATAGAGAGCAA
ATTTTTCTGGAAATTGCTTTGAATAGAAAGCAGTCTGTTTTAGAAACATCTTAAATATTT
TATATTTTGCCTTTCTTTATTGAGCAAGATTGCAGATGCAGGAGTTTTCTATAGTCTTGT
TTTTCATTTTTGAAGTACATTAATGAAAATTATATTAACATGGTTACTATGGCATAACAT
TAATAATAAAAAAATACACATTAACCATTTTTGTTGAAAGAACCAAGCTTTAATTTCAGA
AAAGTGAGTTGTTGGATGTTTATCACTCTATATTCATTTTTCTCTTATAAATATGGATTT
GTGGAACATTATTTTGTTTATAAAATAATATAATTGTTTAAAGGTAATTTTGTAAATATA
CCTTAAGAGTCCTATTCATCTTCTTTTAGGATGTGATGCCAATAAAGTTCTAAGTGTTTT
ATTGGCAGTTCTCCCCTCAAATGCATTAGTCCCATTCTGATGAACTACTAGAAACATTAT
TCTGTATGGTCTTCAGAGCACTGTAGGAATACTGTAGAGGTACTTTTTTAGAAACAAATC
CATGGCTGACAAAGTCAGATTAAATCATTCTCATTGTGAGCCTTAATTGATAAATAACTA
GACACAAACCGTTCTGAAATTGATGGTAAATATCAGTTTCATTTACTAATCTTATCAGAA
TGAAATAAAAAATGTATATGTGCGATTGTAGCCTTCTAAACTTGAATATATGTTTGTATA
CCTTAAAATTTTTCCTTCAAGTTCCATCCATAGGATAGCATACACAGGACTCGAGTATCT
GCATGGGGAAGATGTTGGAATAATCATGATTCACTGATAATCATGTCAGTTCATTTTGGA
CATTATTTCCATCCTCCCTTATTAATCCTTTTAACAGAACTATTAAAATTACCAGGTGAA
TTGATTTTAATTTTAATTTTTAAAATTTTCATCCATGTACTGGTAATGATGCTGAAAAGC
AATCAATGGCCGAAAGGTAGGGAACCAGAAAACTAGAATGACTGAGAAAATAAACAGATG
ATAAACAGCTTCAAGAAAATAAAAGTCAGCTGGGATCTCAAATTTTGTGTTCCTATTTTA
GTGTAAGCACATATGTGAAATGTCTTCATATCAAAGTCTAATAATAGAGAATAGATTTAT
AGGGTTTTGTGTTTTCACAAGAATAAATTGAAATAGGAACTGGTCTGTGCCAATTTTATT
TACATGTAATATGAAATTAACTTGTCAACATAAAAATAATTGGTAAGTCAGAAATAATTT
ATTTGCAACCCTCAGTTATATTTATATTTTTTTTCAAGTTTTTTTCCCAGGGAGAAAATT
AAGATACATGATAGCCATTGTTTAGCATTTATTGATTTACTTGCATAGATTTCATAGAAT
ATTATGTATTTGTCACTCATTAAAAGTTCATTGCTGTGTATCTAATTTAATTCTTCTAAG
ATCCCATCATTTATTAAGAATCACCATTATCTTATGTTCTACTAGAGAAAACACTGCTAA
TAAAATATGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.68518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.68518

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-186, gnl|bosTau2|chr2 (26900387-26900573)
               

               
               1-186, gnl|canFam2|chr6 (75195102-75194923)
               

               
               1-186, gnl|danRer3|chr15 (16676941-16676782)
               

               
               1-186, gnl|fr1|chrUn (228061425-228061257)
               

               
               1-186, gnl|galGal2|chr8 (29727463-29727616)
               

               
               1-186, gnl|hg17|chr1 (74383372-74383547)
               

               
               1-186, gnl|Hg17|chr1 (74383379-74383546)
               

               
               1-186, gnl|loxAfr1|scaffold_7796 (35375-35554)
               

               
               1-186, gnl|mm7|chr3 (154995269-154995092)
               

               
               1-186, gnl|Mm7|chr3 (154995260-154995084)
               

               
               1-186, gnl|monDom2|scaffold_40 (372292-372110)
               

               
               1-186, gnl|oryCun1|scaffold_145467 (10091-10267)
               

               
               1-186, gnl|panTro1|chr1 (72958431-72958606)
               

               
               1-186, gnl|rheMac2|chr1 (77022041-77022216)
               

               
               1-186, gnl|rn3|chr2 (252893636-252893457)
               

               
               1-186, gnl|tetNig1|chr1 (9803798-9803652)
               

               
               1-186, gnl|xenTro1|scaffold_537 (65832-65635)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr2 (26900387-26900573)
               

               
               1-186, gnl|canFam2|chr6 (75195102-75194923)
               

               
               1-186, gnl|danRer3|chr15 (16676941-16676782)
               

               
               1-186, gnl|fr1|chrUn (228061425-228061257)
               

               
               1-186, gnl|galGal2|chr8 (29727463-29727616)
               

               
               1-186, gnl|hg17|chr1 (74383372-74383547)
               

               
               1-186, gnl|Hg17|chr1 (74383379-74383546)
               

               
               1-186, gnl|loxAfr1|scaffold_7796 (35375-35554)
               

               
               1-186, gnl|mm7|chr3 (154995269-154995092)
               

               
               1-186, gnl|Mm7|chr3 (154995260-154995084)
               

               
               1-186, gnl|monDom2|scaffold_40 (372292-372110)
               

               
               1-186, gnl|oryCun1|scaffold_145467 (10091-10267)
               

               
               1-186, gnl|panTro1|chr1 (72958431-72958606)
               

               
               1-186, gnl|rheMac2|chr1 (77022041-77022216)
               

               
               1-186, gnl|rn3|chr2 (252893636-252893457)
               

               
               1-186, gnl|tetNig1|chr1 (9803798-9803652)
               

               
               1-186, gnl|xenTro1|scaffold_537 (65832-65635)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	1-186, gnl\|bosTau2\|chr2 (26900387-26900573)
	1-186, gnl\|canFam2\|chr6 (75195102-75194923)
	1-186, gnl\|danRer3\|chr15 (16676941-16676782)
	1-186, gnl\|fr1\|chrUn (228061425-228061257)
	1-186, gnl\|galGal2\|chr8 (29727463-29727616)
	1-186, gnl\|hg17\|chr1 (74383372-74383547)
	1-186, gnl\|Hg17\|chr1 (74383379-74383546)
	1-186, gnl\|loxAfr1\|scaffold_7796 (35375-35554)
	1-186, gnl\|mm7\|chr3 (154995269-154995092)
	1-186, gnl\|Mm7\|chr3 (154995260-154995084)
	1-186, gnl\|monDom2\|scaffold_40 (372292-372110)
	1-186, gnl\|oryCun1\|scaffold_145467 (10091-10267)
	1-186, gnl\|panTro1\|chr1 (72958431-72958606)
	1-186, gnl\|rheMac2\|chr1 (77022041-77022216)
	1-186, gnl\|rn3\|chr2 (252893636-252893457)
	1-186, gnl\|tetNig1\|chr1 (9803798-9803652)
	1-186, gnl\|xenTro1\|scaffold_537 (65832-65635)