Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I01.5

Sequence:


               
               GGAGAAGCTGCTGGCCACGGAGCAGGAGGATGCGGCCGTCGCCAAGAGCAAACTGAGGGA
GCTCAATAAGGAGCTGGCAGCGGAAAAGGCCAAGGCAGCAGCCGGGGAGGCCAAGGTGAA
AAAGCAGCTGGTGGCCCGGGAGCAGGAGATCACGGCCGTGCAGGCGCGCATGCAGGCCAG
CTACCGGGAGCACGTGAAGGAGGTGCAGCAGCTGCAGGGCAAGATCCGGACGCTTCAGGA
GCAGCTGGAGAATGGCCCCAATGCGCAGCTGGCCCGGCAGGTGACAGGAAAGCAAGCCAA
GATGGATATTTACGACACTCAAACCTTGGGGGTTGTGGTTTTTGGTGGATTCATGGTGGT
TTCTGCCATCGGCATCTTCCTGGTGTCGACATTCTCAATGAAGGAGACGTCATATGAAGA
AGCTCTAGCCAACCAGCGCAAGGAGATGGCGAAAACTCACCACCAGAAAGTGGAGAAGAA
GAAGAAGGAGAAGACAGTAGAGAAGAAAGGAAAGACCAAGAAAAAGGAAGAGAAGCCCAA
CGGGAAGATACCTGACCATGAGCCAGCCCCTGATGTGACCATCCTGCGCAAAGACCCAGT
GCACACACCTGCAGTGGCTGTGGCTCCAACCCCAGTCCAGTCCCCTGTGATCATTGCGCC
TGTAGCCACAGTACCAGCCATGCCCCAGGAGAAGCCGGCCTCTTCCCCTAAGGACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGCTGCTGGCCACGGAGCAGGAGGATGCGGCCGTCGCCAAGAGCAAACTGAGGGA
GCTCAATAAGGAGCTGGCAGCGGAAAAGGCCAAGGCAGCAGCCGGGGAGGCCAAGGTGAA
AAAGCAGCTGGTGGCCCGGGAGCAGGAGATCACGGCCGTGCAGGCGCGCATGCAGGCCAG
CTACCGGGAGCACGTGAAGGAGGTGCAGCAGCTGCAGGGCAAGATCCGGACGCTTCAGGA
GCAGCTGGAGAATGGCCCCAATGCGCAGCTGGCCCGGCAGGTGACAGGAAAGCAAGCCAA
GATGGATATTTACGACACTCAAACCTTGGGGGTTGTGGTTTTTGGTGGATTCATGGTGGT
TTCTGCCATCGGCATCTTCCTGGTGTCGACATTCTCAATGAAGGAGACGTCATATGAAGA
AGCTCTAGCCAACCAGCGCAAGGAGATGGCGAAAACTCACCACCAGAAAGTGGAGAAGAA
GAAGAAGGAGAAGACAGTAGAGAAGAAAGGAAAGACCAAGAAAAAGGAAGAGAAGCCCAA
CGGGAAGATACCTGACCATGAGCCAGCCCCTGATGTGACCATCCTGCGCAAAGACCCAGT
GCACACACCTGCAGTGGCTGTGGCTCCAACCCCAGTCCAGTCCCCTGTGATCATTGCGCC
TGTAGCCACAGTACCAGCCATGCCCCAGGAGAAGCCGGCCTCTTCCCCTAAGGACAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CAB9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CAB9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               106-475, - strand, RNAz p=0.960313
               

               
               107-223, - strand, RNAz p=0.552156

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-475, - strand, RNAz p=0.960313
               

               
               107-223, - strand, RNAz p=0.552156

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               69-223, gnl|bosTau2|chr13 (23567089-23566935)
               

               
               69-223, gnl|canFam2|chr24 (8368704-8368564)
               

               
               69-223, gnl|dasNov1|scaffold_57130 (5084-5237)
               

               
               69-223, gnl|echTel1|scaffold_315387 (43720-43874)
               

               
               69-223, gnl|Hg17|chr20 (17565376-17565222)
               

               
               69-223, gnl|hg17|chr3 (22828297-22828427)
               

               
               69-223, gnl|mm7|chr2 (143710268-143710421)
               

               
               69-223, gnl|Mm7|chr2 (143710421-143710267)
               

               
               69-223, gnl|oryCun1|scaffold_214226 (59897-59746)
               

               
               69-223, gnl|panTro1|chr2 (23724689-23724819)
               

               
               69-223, gnl|rheMac2|chr2 (165092294-165092425)
               

               
               69-223, gnl|rn3|chr3 (132314259-132314412)
               


               
               276-720, gnl|bosTau2|chr13 (23580312-23579868)
               

               
               276-720, gnl|Hg17|chr20 (17589178-17588734)
               

               
               276-720, gnl|Mm7|chr2 (143731128-143730684)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-223, gnl|bosTau2|chr13 (23567089-23566935)
               

               
               69-223, gnl|canFam2|chr24 (8368704-8368564)
               

               
               69-223, gnl|dasNov1|scaffold_57130 (5084-5237)
               

               
               69-223, gnl|echTel1|scaffold_315387 (43720-43874)
               

               
               69-223, gnl|Hg17|chr20 (17565376-17565222)
               

               
               69-223, gnl|hg17|chr3 (22828297-22828427)
               

               
               69-223, gnl|mm7|chr2 (143710268-143710421)
               

               
               69-223, gnl|Mm7|chr2 (143710421-143710267)
               

               
               69-223, gnl|oryCun1|scaffold_214226 (59897-59746)
               

               
               69-223, gnl|panTro1|chr2 (23724689-23724819)
               

               
               69-223, gnl|rheMac2|chr2 (165092294-165092425)
               

               
               69-223, gnl|rn3|chr3 (132314259-132314412)
               


               
               276-720, gnl|bosTau2|chr13 (23580312-23579868)
               

               
               276-720, gnl|Hg17|chr20 (17589178-17588734)
               

               
               276-720, gnl|Mm7|chr2 (143731128-143730684)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               cly (0.120642)

	106-475, - strand, RNAz p=0.960313
	107-223, - strand, RNAz p=0.552156

	69-223, gnl\|bosTau2\|chr13 (23567089-23566935)
	69-223, gnl\|canFam2\|chr24 (8368704-8368564)
	69-223, gnl\|dasNov1\|scaffold_57130 (5084-5237)
	69-223, gnl\|echTel1\|scaffold_315387 (43720-43874)
	69-223, gnl\|Hg17\|chr20 (17565376-17565222)
	69-223, gnl\|hg17\|chr3 (22828297-22828427)
	69-223, gnl\|mm7\|chr2 (143710268-143710421)
	69-223, gnl\|Mm7\|chr2 (143710421-143710267)
	69-223, gnl\|oryCun1\|scaffold_214226 (59897-59746)
	69-223, gnl\|panTro1\|chr2 (23724689-23724819)
	69-223, gnl\|rheMac2\|chr2 (165092294-165092425)
	69-223, gnl\|rn3\|chr3 (132314259-132314412)

	276-720, gnl\|bosTau2\|chr13 (23580312-23579868)
	276-720, gnl\|Hg17\|chr20 (17589178-17588734)
	276-720, gnl\|Mm7\|chr2 (143731128-143730684)