Ss1.1-Pig4-TMW8053I04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGGCGGAGGTGGCGAAGAGGCCTGCGGCGGCAGGGAGCAGCAGGGCTGGGAGCAGGC GCCGGAACCGAGCCGAGCCGAGCCGAAGCGGGCGGCGCAGGCCGGCGCGGCGAGCAGCAA CCATGTCGGTGTTTGGGAAGCTGTTCGGGGCTGGAGGGGGTAAGGCCGGCAAGGGCGGCC CGACCCCCCAGGAGGCCATCCAGAGACTGCGGGACACAGAGGAGATGCTAAGTAAGAAAC AGGAATTCCTGGAGAAGAAGATCGAACAGGAACTGACGGCCGCCAAGAAGCACGGCACTA AAAACAAGCGCGCGGCCCTCCAGGCCCTGAAGCGCAAGAAGCGGTATGAAAAGCAGCTGG CGCAGATTGACGGCACGCTGTCAACCATCGAGTTCCAGCGAGAGGCCCTGGAGAACGCCA ACACCAACACCGAGGTGCTCAAGAACATGGGCTATGCCGCCAAGGCCATGAAGGCCGCCC ACGACAACATGGACATCGATAAAGTTGATGAGTTAATGCAGGACATTGCTGACCAGCAAG AACTTGCAGAAGAGATTTCAACAGCTATTTCAAAACCTGTAGGGTTTGGAGAAGAGTTTG ATGAGGATGAGCTCATGGCAGAATTAGAGGAACTAGAACAGGAGGAACTAGACAAGAATT TGCTGGAAATCAGTGGACCTGAAACAGTCCCTCTACCAAATGTTCCCTCTATAACCCTAC CATCAAAACCCACCAAGAAGAAGGAAGAAGAAGACGACGACATGAAGGAATTGGAGACCT GGGCTGGATCCATTTAACCGGTCCAGTGCGGGCTGGGCCCAGACAGACTCTGGTGGCCTG CGCGGCGGGCAGGCGTATGCGTGTGCGGGGCAGGCAGGACGCGGTGCAGGCAGGGTCCAT CGCTCTCGAATCTCCCTCCAAAGCAGTAGGGCCGCATCACTGCTCACTCTGCATAGCATG GTCTGCACCCAGCGGGACGGGCGGGGGTGGGGTGGGGGGCGGGGGTGGGTGCCTGCTGTT TATAATGTTGAATTTCTGTAAAATAAACTGTATTTGCAAATCCAACACTGAGCTTCTGGA CTACGCTAACTCCACTGCTGAACCTCAGTGGAAAGGGTCGACCATTTGCAGTTGAAATGA TCTGAAAATGTAGCCTCTGTCCTTTTAAGTCAGCTGACTTTGTAAGACTTGTATGGTACT GGCAGAAAGTTGTTTTTTAAAAGCCATAGGCTTTTCCTTGTCCTTAGCTGTAATAATGCA TCTGATTTTGGTTTCCTCGAGAGCTGTATTTCTGTCCATCGCCTGTGTACTGGCCCTGTG TTTACCACTCTGGCCCACTCCTCACTCCTACTCCCCTGGTCTTTTTGGAGTTTGTGACAC TGGTTTGAAAGGGATGGTGGTCTCTTGAGAGCGTGTGAGATTGTTAGAGTGAAATTCCAG CTATATACGTTTTTCTAACATAGCTCTAAGGTCCTTGTTGCTGTTTGTGATAACTGATAG ATAACTCATTGGAAACATGTGCATACATTTATATTCAGATGAAATTATGGTTTGCACTGT CTATTAAATATCTCGATTAATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGGCGGAGGTGGCGAAGAGGCCTGCGGCGGCAGGGAGCAGCAGGGCTGGGAGCAGGC GCCGGAACCGAGCCGAGCCGAGCCGAAGCGGGCGGCGCAGGCCGGCGCGGCGAGCAGCAA CCATGTCGGTGTTTGGGAAGCTGTTCGGGGCTGGAGGGGGTAAGGCCGGCAAGGGCGGCC CGACCCCCCAGGAGGCCATCCAGAGACTGCGGGACACAGAGGAGATGCTAAGTAAGAAAC AGGAATTCCTGGAGAAGAAGATCGAACAGGAACTGACGGCCGCCAAGAAGCACGGCACTA AAAACAAGCGCGCGGCCCTCCAGGCCCTGAAGCGCAAGAAGCGGTATGAAAAGCAGCTGG CGCAGATTGACGGCACGCTGTCAACCATCGAGTTCCAGCGAGAGGCCCTGGAGAACGCCA ACACCAACACCGAGGTGCTCAAGAACATGGGCTATGCCGCCAAGGCCATGAAGGCCGCCC ACGACAACATGGACATCGATAAAGTTGATGAGTTAATGCAGGACATTGCTGACCAGCAAG AACTTGCAGAAGAGATTTCAACAGCTATTTCAAAACCTGTAGGGTTTGGAGAAGAGTTTG ATGAGGATGAGCTCATGGCAGAATTAGAGGAACTAGAACAGGAGGAACTAGACAAGAATT TGCTGGAAATCAGTGGACCTGAAACAGTCCCTCTACCAAATGTTCCCTCTATAACCCTAC CATCAAAACCCACCAAGAAGAAGGAAGAAGAAGACGACGACATGAAGGAATTGGAGACCT GGGCTGGATCCATTTAACCGGTCCAGTGCGGGCTGGGCCCAGACAGACTCTGGTGGCCTG CGCGGCGGGCAGGCGTATGCGTGTGCGGGGCAGGCAGGACGCGGTGCAGGCAGGGTCCAT CGCTCTCGAATCTCCCTCCAAAGCAGTAGGGCCGCATCACTGCTCACTCTGCATAGCATG GTCTGCACCCAGCGGGACGGGCGGGGGTGGGGTGGGGGGCGGGGGTGGGTGCCTGCTGTT TATAATGTTGAATTTCTGTAAAATAAACTGTATTTGCAAATCCAACACTGAGCTTCTGGA CTACGCTAACTCCACTGCTGAACCTCAGTGGAAAGGGTCGACCATTTGCAGTTGAAATGA TCTGAAAATGTAGCCTCTGTCCTTTTAAGTCAGCTGACTTTGTAAGACTTGTATGGTACT GGCAGAAAGTTGTTTTTTAAAAGCCATAGGCTTTTCCTTGTCCTTAGCTGTAATAATGCA TCTGATTTTGGTTTCCTCGAGAGCTGTATTTCTGTCCATCGCCTGTGTACTGGCCCTGTG TTTACCACTCTGGCCCACTCCTCACTCCTACTCCCCTGGTCTTTTTGGAGTTTGTGACAC TGGTTTGAAAGGGATGGTGGTCTCTTGAGAGCGTGTGAGATTGTTAGAGTGAAATTCCAG CTATATACGTTTTTCTAACATAGCTCTAAGGTCCTTGTTGCTGTTTGTGATAACTGATAG ATAACTCATTGGAAACATGTGCATACATTTATATTCAGATGAAATTATGGTTTGCACTGT CTATTAAATATCTCGATTAATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 613-730, - strand, RNAz p=0.669911 | |
| 772-890, - strand, RNAz p=0.855234 | |
| 1458-1577, + strand, RNAz p=0.751864 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 613-730, - strand, RNAz p=0.669911 | |
| 772-890, - strand, RNAz p=0.855234 | |
| 1458-1577, + strand, RNAz p=0.751864 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_176812, + |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 177-308, gnl|bosTau2|chr10 (12280685-12280816) | |
| 177-308, gnl|Hg17|chr14 (23750861-23750730) | |
| 312-491, gnl|bosTau2|chr10 (12280907-12281086) | |
| 312-491, gnl|canFam2|chr8 (7203742-7203928) | |
| 312-491, gnl|danRer3|chrNA (149052677-149052493) | |
| 312-491, gnl|dasNov1|scaffold_49563 (3416-3229) | |
| 312-491, gnl|echTel1|scaffold_189359 (9153-9339) | |
| 312-491, gnl|fr1|chrUn (251050915-251050730) | |
| 312-491, gnl|hg17|chr14 (23750457-23750643) | |
| 312-491, gnl|Hg17|chr14 (23750639-23750460) | |
| 312-491, gnl|loxAfr1|scaffold_11963 (58172-57986) | |
| 312-491, gnl|mm7|chr2 (154430559-154430375) | |
| 312-491, gnl|Mm7|chr2 (154430375-154430554) | |
| 312-491, gnl|monDom2|scaffold_12 (25555147-25554961) | |
| 312-491, gnl|oryCun1|scaffold_178860 (84194-84008) | |
| 312-491, gnl|panTro1|chr15 (22652318-22652504) | |
| 312-491, gnl|rheMac2|chr7 (87105665-87105851) | |
| 312-491, gnl|rn3|chr4_random (563504-563682) | |
| 312-491, gnl|tetNig1|chrUn_random (11884305-11884490) | |
| 312-491, gnl|xenTro1|scaffold_35 (1831227-1831412) | |
| 604-730, gnl|bosTau2|chr13 (48136069-48135943) | |
| 604-730, gnl|canFam2|chr24 (26019895-26020054) | |
| 604-730, gnl|danRer3|chr15 (4649845-4650051) | |
| 604-730, gnl|dasNov1|scaffold_99013 (6466-6310) | |
| 604-730, gnl|echTel1|scaffold_313407 (47724-47877) | |
| 604-730, gnl|fr1|chrUn (151793493-151793350) | |
| 604-730, gnl|galGal2|chr20 (2010449-2010291) | |
| 604-730, gnl|hg17|chr20 (31903524-31903681) | |
| 604-730, gnl|Hg17|chr20 (31903542-31903668) | |
| 604-730, gnl|loxAfr1|scaffold_9228 (38424-38267) | |
| 604-730, gnl|mm7|chr2 (154433396-154433544) | |
| 604-730, gnl|Mm7|chr2 (154433405-154433531) | |
| 604-730, gnl|monDom2|scaffold_6 (13186382-13186226) | |
| 604-730, gnl|oryCun1|scaffold_202670 (58403-58522) | |
| 604-730, gnl|panTro1|chr21 (33872224-33872381) | |
| 604-730, gnl|rheMac2|chr10 (30754340-30754183) | |
| 604-730, gnl|rn3|chr3 (145081512-145081661) | |
| 604-730, gnl|tetNig1|chr9 (1053804-1053656) | |
| 604-730, gnl|xenTro1|scaffold_35 (1829056-1828906) | |
| 733-1586, gnl|bosTau2|chr13 (48134761-48133888) | |
| 733-1586, gnl|Hg17|chr20 (31904963-31905831) | |
| 733-1586, gnl|Mm7|chr2 (154434802-154435641) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 177-308, gnl|bosTau2|chr10 (12280685-12280816) | |
| 177-308, gnl|Hg17|chr14 (23750861-23750730) | |
| 312-491, gnl|bosTau2|chr10 (12280907-12281086) | |
| 312-491, gnl|canFam2|chr8 (7203742-7203928) | |
| 312-491, gnl|danRer3|chrNA (149052677-149052493) | |
| 312-491, gnl|dasNov1|scaffold_49563 (3416-3229) | |
| 312-491, gnl|echTel1|scaffold_189359 (9153-9339) | |
| 312-491, gnl|fr1|chrUn (251050915-251050730) | |
| 312-491, gnl|hg17|chr14 (23750457-23750643) | |
| 312-491, gnl|Hg17|chr14 (23750639-23750460) | |
| 312-491, gnl|loxAfr1|scaffold_11963 (58172-57986) | |
| 312-491, gnl|mm7|chr2 (154430559-154430375) | |
| 312-491, gnl|Mm7|chr2 (154430375-154430554) | |
| 312-491, gnl|monDom2|scaffold_12 (25555147-25554961) | |
| 312-491, gnl|oryCun1|scaffold_178860 (84194-84008) | |
| 312-491, gnl|panTro1|chr15 (22652318-22652504) | |
| 312-491, gnl|rheMac2|chr7 (87105665-87105851) | |
| 312-491, gnl|rn3|chr4_random (563504-563682) | |
| 312-491, gnl|tetNig1|chrUn_random (11884305-11884490) | |
| 312-491, gnl|xenTro1|scaffold_35 (1831227-1831412) | |
| 604-730, gnl|bosTau2|chr13 (48136069-48135943) | |
| 604-730, gnl|canFam2|chr24 (26019895-26020054) | |
| 604-730, gnl|danRer3|chr15 (4649845-4650051) | |
| 604-730, gnl|dasNov1|scaffold_99013 (6466-6310) | |
| 604-730, gnl|echTel1|scaffold_313407 (47724-47877) | |
| 604-730, gnl|fr1|chrUn (151793493-151793350) | |
| 604-730, gnl|galGal2|chr20 (2010449-2010291) | |
| 604-730, gnl|hg17|chr20 (31903524-31903681) | |
| 604-730, gnl|Hg17|chr20 (31903542-31903668) | |
| 604-730, gnl|loxAfr1|scaffold_9228 (38424-38267) | |
| 604-730, gnl|mm7|chr2 (154433396-154433544) | |
| 604-730, gnl|Mm7|chr2 (154433405-154433531) | |
| 604-730, gnl|monDom2|scaffold_6 (13186382-13186226) | |
| 604-730, gnl|oryCun1|scaffold_202670 (58403-58522) | |
| 604-730, gnl|panTro1|chr21 (33872224-33872381) | |
| 604-730, gnl|rheMac2|chr10 (30754340-30754183) | |
| 604-730, gnl|rn3|chr3 (145081512-145081661) | |
| 604-730, gnl|tetNig1|chr9 (1053804-1053656) | |
| 604-730, gnl|xenTro1|scaffold_35 (1829056-1828906) | |
| 733-1586, gnl|bosTau2|chr13 (48134761-48133888) | |
| 733-1586, gnl|Hg17|chr20 (31904963-31905831) | |
| 733-1586, gnl|Mm7|chr2 (154434802-154435641) |
| Expressed library(ies): 45 entry(ies) | More info |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
| hyp (0.714184) | |
| cje (0.660939) | |
| sme (0.610874) | |
| jej (0.395687) | |
| bla (0.373042) | |
| sto (0.359648) | |
| sin (0.349895) | |
| mcp (0.341297) | |
| vin (0.332557) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| lin (0.291206) | |
| kid (0.259471) | |
| sug (0.254582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| mas (0.210305) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.714184) | |
| cje (0.660939) | |
| sme (0.610874) | |
| jej (0.395687) | |
| bla (0.373042) | |
| sto (0.359648) | |
| sin (0.349895) | |
| mcp (0.341297) | |
| vin (0.332557) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| lin (0.291206) | |
| kid (0.259471) | |
| sug (0.254582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| mas (0.210305) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |