Ss1.1-Pig4-TMW8053I06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGCGCAGGTGACGCAGGGACGGGGCGCCTCTCCGGCCCGCGGGCACGGCTGAGTTCT CCAGATAGTGTCAGCTTCTTTGAAGATTCATTTTCTCTGTTAACTTAAAATAACTCTTTT AACCCTTGAGTGGCTTCTTTTTAAACCAAAAATCGTCTTTCTTTGCTTTTTGATCACGGC AGAATCAGGATTTTTCTCTCGTTCAAGGGGGAACTGAAGCCGGCAGCCCGCTCCTGCCCT TGTGCCACCCAGGCCTCCAGGGTCGCGGCTGCCCGTCACTCTTGCTTGTGCCTTCACACC TCTCGGTGCAGATTCTGTCCTGGGGGCTGCCTCACGGTTCCTGATGGCCGGGGGGCTCTC TCCGGGGTCCCTTCCCCACCCCGTCACCCTCTCCTTTGACAGCCCCGCACCACAGCCCCC GAGTCACACGGCGGCCTGCTTGGTCGCACAGAGCTGCCCGTGGAGTCTGCCTGCCGCCCG GGGTCAACAGAGACTTTTTCTCTGGGCCTGAGGGGGCGGCCACCTGGAACCCGAGACGTC CACACAGAGGATGTTTCTCCGACCTTCCATGAGAACAGAGCGTCGTAGGTTGCTTGCTTG GGCTAGAATGTAAGTGTCTCTTTGCCTGAATAAGCCATATCGATAGGTAGCTGTGCTCTT ACACAGATTTCAGTTGTCCCTGTGGGCTCGGCGGAACTGCCGCTGGACGCCTGGTTGACC AGGTTGAGCAATAGAAACGGCTGGGCTTCGGAGTCAGCCGCCGTCCGGAGCCCCAGGGCG TCTGGGGGGCCGGCTCACAGGCACTCGGCTCAGTCCCCCTCAGCCCAGGCAGCGGCTCCG TGAGGCCAAACCCCACACACTCAAGGTGATGGAACACCCCTCGAGGGCTCTGTCCTCGCC TCCTGGTTAGTATTTATTTTCAGCACCTGTTTAATGCGGTTTTTTATCCTCTACCTATTG CACTGTTGTGACTTGTTGGCCATTATTTGATTTTTGTACGAAAAAAAGCTTTGTTATAGA AATCAGCATACTATTTTTTTAAATCTGGAGAGAAGATATTATGGTGACTGAAAATATGGT CAGGTGTCAAATATAAACATAAAAGCCTTCACTGTCCTGTCGGTCATGTTACATTCATTT TATATTTGCTGGCAATATTGAAGGTTTCTTTTTTTGTTGTGTAAACTCTCATTTCTATCA AGGTGTTATGAATTTTTAAAATTAGTATTTCGTTACAATTGTCTCAGCATTGGTTAACTA ATTTTTGCCAGGACCATGATGGATCAAGCAAATAAATTCAACAGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGCGCAGGTGACGCAGGGACGGGGCGCCTCTCCGGCCCGCGGGCACGGCTGAGTTCT CCAGATAGTGTCAGCTTCTTTGAAGATTCATTTTCTCTGTTAACTTAAAATAACTCTTTT AACCCTTGAGTGGCTTCTTTTTAAACCAAAAATCGTCTTTCTTTGCTTTTTGATCACGGC AGAATCAGGATTTTTCTCTCGTTCAAGGGGGAACTGAAGCCGGCAGCCCGCTCCTGCCCT TGTGCCACCCAGGCCTCCAGGGTCGCGGCTGCCCGTCACTCTTGCTTGTGCCTTCACACC TCTCGGTGCAGATTCTGTCCTGGGGGCTGCCTCACGGTTCCTGATGGCCGGGGGGCTCTC TCCGGGGTCCCTTCCCCACCCCGTCACCCTCTCCTTTGACAGCCCCGCACCACAGCCCCC GAGTCACACGGCGGCCTGCTTGGTCGCACAGAGCTGCCCGTGGAGTCTGCCTGCCGCCCG GGGTCAACAGAGACTTTTTCTCTGGGCCTGAGGGGGCGGCCACCTGGAACCCGAGACGTC CACACAGAGGATGTTTCTCCGACCTTCCATGAGAACAGAGCGTCGTAGGTTGCTTGCTTG GGCTAGAATGTAAGTGTCTCTTTGCCTGAATAAGCCATATCGATAGGTAGCTGTGCTCTT ACACAGATTTCAGTTGTCCCTGTGGGCTCGGCGGAACTGCCGCTGGACGCCTGGTTGACC AGGTTGAGCAATAGAAACGGCTGGGCTTCGGAGTCAGCCGCCGTCCGGAGCCCCAGGGCG TCTGGGGGGCCGGCTCACAGGCACTCGGCTCAGTCCCCCTCAGCCCAGGCAGCGGCTCCG TGAGGCCAAACCCCACACACTCAAGGTGATGGAACACCCCTCGAGGGCTCTGTCCTCGCC TCCTGGTTAGTATTTATTTTCAGCACCTGTTTAATGCGGTTTTTTATCCTCTACCTATTG CACTGTTGTGACTTGTTGGCCATTATTTGATTTTTGTACGAAAAAAAGCTTTGTTATAGA AATCAGCATACTATTTTTTTAAATCTGGAGAGAAGATATTATGGTGACTGAAAATATGGT CAGGTGTCAAATATAAACATAAAAGCCTTCACTGTCCTGTCGGTCATGTTACATTCATTT TATATTTGCTGGCAATATTGAAGGTTTCTTTTTTTGTTGTGTAAACTCTCATTTCTATCA AGGTGTTATGAATTTTTAAAATTAGTATTTCGTTACAATTGTCTCAGCATTGGTTAACTA ATTTTTGCCAGGACCATGATGGATCAAGCAAATAAATTCAACAGCCAT |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 36-317, gnl|bosTau2|chr24 (31763722-31763459) | |
| 36-317, gnl|Hg17|chr18 (9526010-9526425) | |
| 36-317, gnl|Mm7|chr17 (64067334-64067024) | |
| 531-774, gnl|bosTau2|chr24 (31763374-31763129) | |
| 531-774, gnl|canFam2|chr7 (78556632-78557223) | |
| 531-774, gnl|canFam2|chr7 (78556632-78557223) | |
| 531-774, gnl|dasNov1|scaffold_26719 (50712-50172) | |
| 531-774, gnl|dasNov1|scaffold_26719 (50712-50172) | |
| 531-774, gnl|echTel1|scaffold_310727 (11557-10948) | |
| 531-774, gnl|echTel1|scaffold_310727 (11557-10948) | |
| 531-774, gnl|hg17|chr18 (9526530-9527156) | |
| 531-774, gnl|Hg17|chr18 (9526705-9526967) | |
| 531-774, gnl|hg17|chr3 (181526150-181526767) | |
| 531-774, gnl|loxAfr1|scaffold_46677 (2896-2288) | |
| 531-774, gnl|loxAfr1|scaffold_46677 (2896-2288) | |
| 531-774, gnl|mm7|chr17 (64066931-64066406) | |
| 531-774, gnl|mm7|chr17 (64066931-64066406) | |
| 531-774, gnl|Mm7|chr17 (64066784-64066557) | |
| 531-774, gnl|monDom2|scaffold_21 (23229491-23228873) | |
| 531-774, gnl|monDom2|scaffold_21 (23229491-23228852) | |
| 531-774, gnl|panTro1|chr17 (3133668-3133043) | |
| 531-774, gnl|panTro1|chr2 (185283816-185284433) | |
| 531-774, gnl|rheMac2|chr18 (4912849-4912215) | |
| 531-774, gnl|rheMac2|chr2 (106435881-106435252) | |
| 531-774, gnl|rn3|chr7 (722991-722451) | |
| 531-774, gnl|rn3|chr9 (104827863-104827324) | |
| 840-1308, gnl|bosTau2|chr24 (31763029-31762559) | |
| 840-1308, gnl|Hg17|chr18 (9527111-9527591) | |
| 840-1308, gnl|Mm7|chr17 (64066443-64065969) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-317, gnl|bosTau2|chr24 (31763722-31763459) | |
| 36-317, gnl|Hg17|chr18 (9526010-9526425) | |
| 36-317, gnl|Mm7|chr17 (64067334-64067024) | |
| 531-774, gnl|bosTau2|chr24 (31763374-31763129) | |
| 531-774, gnl|canFam2|chr7 (78556632-78557223) | |
| 531-774, gnl|canFam2|chr7 (78556632-78557223) | |
| 531-774, gnl|dasNov1|scaffold_26719 (50712-50172) | |
| 531-774, gnl|dasNov1|scaffold_26719 (50712-50172) | |
| 531-774, gnl|echTel1|scaffold_310727 (11557-10948) | |
| 531-774, gnl|echTel1|scaffold_310727 (11557-10948) | |
| 531-774, gnl|hg17|chr18 (9526530-9527156) | |
| 531-774, gnl|Hg17|chr18 (9526705-9526967) | |
| 531-774, gnl|hg17|chr3 (181526150-181526767) | |
| 531-774, gnl|loxAfr1|scaffold_46677 (2896-2288) | |
| 531-774, gnl|loxAfr1|scaffold_46677 (2896-2288) | |
| 531-774, gnl|mm7|chr17 (64066931-64066406) | |
| 531-774, gnl|mm7|chr17 (64066931-64066406) | |
| 531-774, gnl|Mm7|chr17 (64066784-64066557) | |
| 531-774, gnl|monDom2|scaffold_21 (23229491-23228873) | |
| 531-774, gnl|monDom2|scaffold_21 (23229491-23228852) | |
| 531-774, gnl|panTro1|chr17 (3133668-3133043) | |
| 531-774, gnl|panTro1|chr2 (185283816-185284433) | |
| 531-774, gnl|rheMac2|chr18 (4912849-4912215) | |
| 531-774, gnl|rheMac2|chr2 (106435881-106435252) | |
| 531-774, gnl|rn3|chr7 (722991-722451) | |
| 531-774, gnl|rn3|chr9 (104827863-104827324) | |
| 840-1308, gnl|bosTau2|chr24 (31763029-31762559) | |
| 840-1308, gnl|Hg17|chr18 (9527111-9527591) | |
| 840-1308, gnl|Mm7|chr17 (64066443-64065969) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| bfe (0.299715) | |
| nbm (0.297974) | |
| cst (0.280073) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.299715) | |
| nbm (0.297974) | |
| cst (0.280073) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |