Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I11.5

Sequence:


               
               AGCCCGCATCGGGGAGCTGGCGTCCATCGCGCCCGGCGGGCCTGGCGGCCCAGACCAGTG
AGCCGCGCGGAAGGAGCGGTCTGCCATCTGCTCCCTGTCCCCACGGGTCCGCCTATGCAC
ATTACCCTTGTTTCATTACTTTTTCATGTCATTTTTTTATCCCAAAAAATATTTTTTAAA
AGTTAAAAAAATAGACATATCAAACATGCAAATACTTGAATCCAGCAGGCCAATAATGAA
ATGTGAACACTTTCTAATTCTCCACTTCCAGGTTGACATCAGTACGCAGAAACAGGCTCT
AGGAAACATTTCTAAGTTCACAGCCTCTGTGTGTGCGCGCGTGCGTGTGTGCGTGTGCGT
GTGGGTGTGAGTGGAAACCGAAGCACGTGTGCGTGTGCAGGTGTGTGCGCGTTTTCTGTG
TCCGTGTGTGTGTTAAGTGTGTGAGAGATTTAACTGTGGATTTTCCCTTTTATTCAGTAT
GTGCTCTTTTTTTTCTTTTTCTTTTCCTTTTTTTTTTTCTTTTTTGGCGCATTGGTCAAA
GGTTTGTTATTATTATTAGCTTCTAACTTTGCACTGAGTGTCCCTGCCCTTCCTTTAGCT
AATCCTATACATTAAAGAGAATTCTTAGGACAGGGCTGGTGACAATTCATGTGTAAATGT
TTACTCAAGGACTCTGTTATTGCGTTTAAAAATTACAGTGTATATCTCTGGAGAAATAAT
ATGTATACCTACCTTTAGCAGCTTTTTATTGTGGACTAATGCAAGAAAATTATTACCAGA
GTATTGCACCATTTTTCCATTTGGAATATAAAGTTAAAGAGAAAAAAAACTCTTGCTGAA
CTGTGGCCATAGATACTTGTGGAGGATGGATGGTTCCTCGGGAGGAACGGGAACAAGCAC
TTGGACGTGGGTTGTGACTGCTTTCGGAGGAGCCCGTGGTGAGGGCTCCCACCTGTTTAC
AGACCTTTTTTTCTCCTTCAGACTTTAAAATTAAAAAAAAAAAAAAAAAAAATTAAAAAA
GGAATTTAAAAAAAAAAAAAAGACTTCCGTCGTAAAGAAAGCTATTTTCAGAAGCAGGTC
CGCTCCTTCAGAGCTCTGGGATTGAGCAGTGTTGTTTTCCCCTCCGGCCATCGTCGTGGA
CTCTGTCCACTGTCCCTCCATCGAGGGACGAGTGGTGGTCACTGTCTTGCACACGCGGAT
GCGCTCTCAGGAAAGCCAGGGTTCCCGAGGGGCAGCTCCACACCATTTCATGTATTTTGT
AACCCAACTTCTAGCACTGAAGATGTTATTAAAAAAACAAGCAAACAAAAAACAAAGAAA
AAAAAAAAGAAAAAAAGAGGAAAAAAAAACCCACAAAGAAGAAAGATACCTAATCTCTAA
CGTGTAGCAGTTACGTATGTACCAAATAACGGACTCAAAGGAAATAGATGTTCGAAGAGT
GCTTTATATATTAAAAATTGCTTTATGTTTTAAAAATGATCAATGTTTTGATTGTTTTTG
CAAGAAAGACAGACAATGGAGTAACATACCCTCAAGTATGTTTAAAAATATATATATATG
AACATTGTGCTCCCTGCCTGCTTGATCAGGAAACTTGTGCATTACATTTTTTTTAATTAG
CTTTTTAATGGTTTTATCAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCGCATCGGGGAGCTGGCGTCCATCGCGCCCGGCGGGCCTGGCGGCCCAGACCAGTG
AGCCGCGCGGAAGGAGCGGTCTGCCATCTGCTCCCTGTCCCCACGGGTCCGCCTATGCAC
ATTACCCTTGTTTCATTACTTTTTCATGTCATTTTTTTATCCCAAAAAATATTTTTTAAA
AGTTAAAAAAATAGACATATCAAACATGCAAATACTTGAATCCAGCAGGCCAATAATGAA
ATGTGAACACTTTCTAATTCTCCACTTCCAGGTTGACATCAGTACGCAGAAACAGGCTCT
AGGAAACATTTCTAAGTTCACAGCCTCTGTGTGTGCGCGCGTGCGTGTGTGCGTGTGCGT
GTGGGTGTGAGTGGAAACCGAAGCACGTGTGCGTGTGCAGGTGTGTGCGCGTTTTCTGTG
TCCGTGTGTGTGTTAAGTGTGTGAGAGATTTAACTGTGGATTTTCCCTTTTATTCAGTAT
GTGCTCTTTTTTTTCTTTTTCTTTTCCTTTTTTTTTTTCTTTTTTGGCGCATTGGTCAAA
GGTTTGTTATTATTATTAGCTTCTAACTTTGCACTGAGTGTCCCTGCCCTTCCTTTAGCT
AATCCTATACATTAAAGAGAATTCTTAGGACAGGGCTGGTGACAATTCATGTGTAAATGT
TTACTCAAGGACTCTGTTATTGCGTTTAAAAATTACAGTGTATATCTCTGGAGAAATAAT
ATGTATACCTACCTTTAGCAGCTTTTTATTGTGGACTAATGCAAGAAAATTATTACCAGA
GTATTGCACCATTTTTCCATTTGGAATATAAAGTTAAAGAGAAAAAAAACTCTTGCTGAA
CTGTGGCCATAGATACTTGTGGAGGATGGATGGTTCCTCGGGAGGAACGGGAACAAGCAC
TTGGACGTGGGTTGTGACTGCTTTCGGAGGAGCCCGTGGTGAGGGCTCCCACCTGTTTAC
AGACCTTTTTTTCTCCTTCAGACTTTAAAATTAAAAAAAAAAAAAAAAAAAATTAAAAAA
GGAATTTAAAAAAAAAAAAAAGACTTCCGTCGTAAAGAAAGCTATTTTCAGAAGCAGGTC
CGCTCCTTCAGAGCTCTGGGATTGAGCAGTGTTGTTTTCCCCTCCGGCCATCGTCGTGGA
CTCTGTCCACTGTCCCTCCATCGAGGGACGAGTGGTGGTCACTGTCTTGCACACGCGGAT
GCGCTCTCAGGAAAGCCAGGGTTCCCGAGGGGCAGCTCCACACCATTTCATGTATTTTGT
AACCCAACTTCTAGCACTGAAGATGTTATTAAAAAAACAAGCAAACAAAAAACAAAGAAA
AAAAAAAAGAAAAAAAGAGGAAAAAAAAACCCACAAAGAAGAAAGATACCTAATCTCTAA
CGTGTAGCAGTTACGTATGTACCAAATAACGGACTCAAAGGAAATAGATGTTCGAAGAGT
GCTTTATATATTAAAAATTGCTTTATGTTTTAAAAATGATCAATGTTTTGATTGTTTTTG
CAAGAAAGACAGACAATGGAGTAACATACCCTCAAGTATGTTTAAAAATATATATATATG
AACATTGTGCTCCCTGCCTGCTTGATCAGGAAACTTGTGCATTACATTTTTTTTAATTAG
CTTTTTAATGGTTTTATCAAAACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               535-807, - strand, RNAz p=0.860648
               

               
               869-1109, - strand, RNAz p=0.970946
               

               
               1485-1599, - strand, RNAz p=0.833275

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-807, - strand, RNAz p=0.860648
               

               
               869-1109, - strand, RNAz p=0.970946
               

               
               1485-1599, - strand, RNAz p=0.833275

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               598-708, + strand, RNAmicro p=0.999995
               

               
               603-726, - strand, RNAmicro p=0.9902

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               598-708, + strand, RNAmicro p=0.999995
               

               
               603-726, - strand, RNAmicro p=0.9902

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1644, gnl|bosTau2|chr19 (47926550-47924928)
               

               
               11-1644, gnl|Hg17|chr17 (73612967-73614550)
               

               
               11-1644, gnl|Mm7|chr11 (117870297-117871964)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1644, gnl|bosTau2|chr19 (47926550-47924928)
               

               
               11-1644, gnl|Hg17|chr17 (73612967-73614550)
               

               
               11-1644, gnl|Mm7|chr11 (117870297-117871964)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               sto (0.179824)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               sto (0.179824)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	535-807, - strand, RNAz p=0.860648
	869-1109, - strand, RNAz p=0.970946
	1485-1599, - strand, RNAz p=0.833275

	598-708, + strand, RNAmicro p=0.999995
	603-726, - strand, RNAmicro p=0.9902

	11-1644, gnl\|bosTau2\|chr19 (47926550-47924928)
	11-1644, gnl\|Hg17\|chr17 (73612967-73614550)
	11-1644, gnl\|Mm7\|chr11 (117870297-117871964)

	amn (0.417711)
	spl (0.286369)
	fce (0.271592)
	sto (0.179824)
	liv (0.146284)
	cst (0.140036)
	pgl (0.118483)
	cbl (0.114797)