Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I13.5

Sequence:


               
               GTTTAAGCAGTTCTCTATTGACAGACATTTAGACAGCCAGTCTTTTGCAATTAAGCATTG
ATCCATTTGGAACTGATTCAGTATATGGGGTGAGGTAAGAATCCAAATTTTTTTTTTCCA
GATGGCTACATAGTTTGCCGTTTCTTGACCATTTGTTGAAGAGTTCACTTCGAGACTGTT
TTGTTCCGATGGCCTATCTATTCATGCTCCAGTTGCTGGTTTGTTTTAAATTCAGAGACA
TAAAATCTTGTGAGGGATAGTGTTTCACACTTTGTTTGGATCACTTGAAATCTTAGAGCT
AATATTTCAGCCCGTGTGAAGCAACGGTTCAGTACCATGTGGTATGCATTTTCTGTGGGC
TAATTTTTATTTTCCCTTTGCCCTGATTATTTCCACAATTTGTTTTATTTTTTTGTAGAA
CAAGCCAGAATATAAATATACCTTTGTTTAAGACTCTCTGTTTGCATGTAACGGAAACCA
ACCTGAAACGGCTTAACCAAAAGGGAAGAATTTATCATAAGGATGTAGGAACTTCTTACA
AATGCCCAGAGCGGGAAGACAGCTACCTCCTAGCAAAAGACTAGAACCAGGAGTTGGAAA
ACTTCCAGGAACCCAAAAGGTACTCTCTGTAATCCTCCTTCTGTGATTATTTTCTTGGTG
TCTGCCTCCTTGTGCATCTCTCTCTCTCTACTGACTGGTTCTCTCTGCTTTTCCACCTAC
ACAGGAGAATACAGCCACCTCCACATTCAGCTAGGAAGTCAGCTCGGTGTGGGCGTCAGA
GCCCAAACAAGGAGGGTAGGGAGGCGGTCCTGCAGAGTCAGGTGACTAATCAAAGACAGG
GGGACTACACAAAGAAACACTATGTCAAGGATAATGGGAGCCAGATTTCTCATTCTTAAA
ATACAGGAAAGGGAATAGCAAGAAGCTTGAGGGATTGCATTGGAATTGGAAATACTGATG
TGAATACGACGTTTGCAATATGTGTAGATATAAAAATAAATATAAATGTGAAAGTATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAAGCAGTTCTCTATTGACAGACATTTAGACAGCCAGTCTTTTGCAATTAAGCATTG
ATCCATTTGGAACTGATTCAGTATATGGGGTGAGGTAAGAATCCAAATTTTTTTTTTCCA
GATGGCTACATAGTTTGCCGTTTCTTGACCATTTGTTGAAGAGTTCACTTCGAGACTGTT
TTGTTCCGATGGCCTATCTATTCATGCTCCAGTTGCTGGTTTGTTTTAAATTCAGAGACA
TAAAATCTTGTGAGGGATAGTGTTTCACACTTTGTTTGGATCACTTGAAATCTTAGAGCT
AATATTTCAGCCCGTGTGAAGCAACGGTTCAGTACCATGTGGTATGCATTTTCTGTGGGC
TAATTTTTATTTTCCCTTTGCCCTGATTATTTCCACAATTTGTTTTATTTTTTTGTAGAA
CAAGCCAGAATATAAATATACCTTTGTTTAAGACTCTCTGTTTGCATGTAACGGAAACCA
ACCTGAAACGGCTTAACCAAAAGGGAAGAATTTATCATAAGGATGTAGGAACTTCTTACA
AATGCCCAGAGCGGGAAGACAGCTACCTCCTAGCAAAAGACTAGAACCAGGAGTTGGAAA
ACTTCCAGGAACCCAAAAGGTACTCTCTGTAATCCTCCTTCTGTGATTATTTTCTTGGTG
TCTGCCTCCTTGTGCATCTCTCTCTCTCTACTGACTGGTTCTCTCTGCTTTTCCACCTAC
ACAGGAGAATACAGCCACCTCCACATTCAGCTAGGAAGTCAGCTCGGTGTGGGCGTCAGA
GCCCAAACAAGGAGGGTAGGGAGGCGGTCCTGCAGAGTCAGGTGACTAATCAAAGACAGG
GGGACTACACAAAGAAACACTATGTCAAGGATAATGGGAGCCAGATTTCTCATTCTTAAA
ATACAGGAAAGGGAATAGCAAGAAGCTTGAGGGATTGCATTGGAATTGGAAATACTGATG
TGAATACGACGTTTGCAATATGTGTAGATATAAAAATAAATATAAATGTGAAAGTATCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               274-432, - strand, RNAz p=0.523124
               

               
               671-830, + strand, RNAz p=0.985244

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-432, - strand, RNAz p=0.523124
               

               
               671-830, + strand, RNAz p=0.985244

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-990, gnl|bosTau2|chr21 (39935509-39934509)
               

               
               2-990, gnl|Hg17|chr14 (94696345-94697303)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-990, gnl|bosTau2|chr21 (39935509-39934509)
               

               
               2-990, gnl|Hg17|chr14 (94696345-94697303)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               hyp (0.142837)

	274-432, - strand, RNAz p=0.523124
	671-830, + strand, RNAz p=0.985244

	2-990, gnl\|bosTau2\|chr21 (39935509-39934509)
	2-990, gnl\|Hg17\|chr14 (94696345-94697303)