Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I14.5

Sequence:


               
               GCATCTTGGAGAAGTCCTGCAGCATGAACCAGCTTTCCAGTGGCATCCCGGTGCCGAAAC
CTCGCCACACGTCGTGCTCGTCAGCCGGCAACGACAGCAAACCCGGGCAGGAGGCCCCGA
GCGTCGCCAGGATAAGCAGCATCCCTCATGACCTTTGTCATAACGGAGAGAAAAGCAAAA
AGCCATCCAAAATTAAAAGCCTTTTTAAGAAGAAATCCAAGTGAACTGGCTGCCTGGATG
GGATTCCATTCAAATGGCATCTCTAAACGTCCATCTCCCGTCCTTCCTTGGCTCCCCCCT
TTTTTGTGTTGATTTTAGGAATGTAACTTTCCAGACTGGATGCCTTAGTGGGATGTCCTC
AAGGGCGGCTGTCTACTGTCTGCTTATTTAAGTGACTATATAATCAGTTTGTCAAGCCCG
TTATTACTGAGAAATCATTCAGACGTGAGACAGTTTACAGTCATTTTTTGCCTATTTATT
TCTGCTTTGTTATTAGTGATGTATATACAACAGTTTGTTGAAAGCCACTGTGGACTTACA
AGCTTTAATGGACTAGTAAGCCAGCATGGGCTTGCAAAAATTCCTTGTTTACCAGAGCAT
CTTCTTATCTTTCCACAGAGCTATTTACATCCTGGACTAAGATAACTTAAAAGGAGTAAA
ACTAATTGCACTACTGTTTTCCAGACTGGAAAAAAAAATCTCTGCAAGTGAAACTGTATA
GAGTTTATAAAAAGACTATGGGTAGGGGACTGTTTTCCCTTTTAGATCAAATGGGTTTTT
AAGTAGAACCTAGGGTTTCTAATTGACTTGATTTCTGGAAAGGAAAATGCTTTTATGAAT
GGGAAGCTTCTTTAAACGCATTTAACGTTGTAAAGTTTCGAGTCCTGCTGTAAAGATCAT
GTCGTTTTGTTTTTTTCCCAGGGCTTTCACTGTGATTTTCTGCGTTGCAGGCTGTATGAT
ACAACATAAGTAATTTAAAGAGAGAAGGCTCTTGATTCCTTCCACAAGGAGAAGAGTTAA
AACTTGATTGAAGGACTTAAAACATTCACAAGCTTATTCTGAGGTGGGGGCTGTGGGGTT
TCAGGCACTTGTTTACAGACTTGACAGCAGCAAAGGATTTACGGTTTGTGGAAAAACTTG
TACTGTGGAAAAGATAATAAATCAGAGACATTATTGTGTGGGACTGTGCTGATTTTTGTT
GATAACACTCCACTAAAAACACTATATGTTTTCTGGAGAGCTGTGTGAGCTGTCGTCTTG
CTTAACTGCAACATAAGAAATCGTGATGTTTTGGAAGAAGGTTGTCAACAAATTTCTTTC
TATTTTATATTGTTTGTCATATTTTTATGTAGTTTGAAATGTTTAAATGTCCTCATATCA
AGATTAACAAATATAAATTTATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCTTGGAGAAGTCCTGCAGCATGAACCAGCTTTCCAGTGGCATCCCGGTGCCGAAAC
CTCGCCACACGTCGTGCTCGTCAGCCGGCAACGACAGCAAACCCGGGCAGGAGGCCCCGA
GCGTCGCCAGGATAAGCAGCATCCCTCATGACCTTTGTCATAACGGAGAGAAAAGCAAAA
AGCCATCCAAAATTAAAAGCCTTTTTAAGAAGAAATCCAAGTGAACTGGCTGCCTGGATG
GGATTCCATTCAAATGGCATCTCTAAACGTCCATCTCCCGTCCTTCCTTGGCTCCCCCCT
TTTTTGTGTTGATTTTAGGAATGTAACTTTCCAGACTGGATGCCTTAGTGGGATGTCCTC
AAGGGCGGCTGTCTACTGTCTGCTTATTTAAGTGACTATATAATCAGTTTGTCAAGCCCG
TTATTACTGAGAAATCATTCAGACGTGAGACAGTTTACAGTCATTTTTTGCCTATTTATT
TCTGCTTTGTTATTAGTGATGTATATACAACAGTTTGTTGAAAGCCACTGTGGACTTACA
AGCTTTAATGGACTAGTAAGCCAGCATGGGCTTGCAAAAATTCCTTGTTTACCAGAGCAT
CTTCTTATCTTTCCACAGAGCTATTTACATCCTGGACTAAGATAACTTAAAAGGAGTAAA
ACTAATTGCACTACTGTTTTCCAGACTGGAAAAAAAAATCTCTGCAAGTGAAACTGTATA
GAGTTTATAAAAAGACTATGGGTAGGGGACTGTTTTCCCTTTTAGATCAAATGGGTTTTT
AAGTAGAACCTAGGGTTTCTAATTGACTTGATTTCTGGAAAGGAAAATGCTTTTATGAAT
GGGAAGCTTCTTTAAACGCATTTAACGTTGTAAAGTTTCGAGTCCTGCTGTAAAGATCAT
GTCGTTTTGTTTTTTTCCCAGGGCTTTCACTGTGATTTTCTGCGTTGCAGGCTGTATGAT
ACAACATAAGTAATTTAAAGAGAGAAGGCTCTTGATTCCTTCCACAAGGAGAAGAGTTAA
AACTTGATTGAAGGACTTAAAACATTCACAAGCTTATTCTGAGGTGGGGGCTGTGGGGTT
TCAGGCACTTGTTTACAGACTTGACAGCAGCAAAGGATTTACGGTTTGTGGAAAAACTTG
TACTGTGGAAAAGATAATAAATCAGAGACATTATTGTGTGGGACTGTGCTGATTTTTGTT
GATAACACTCCACTAAAAACACTATATGTTTTCTGGAGAGCTGTGTGAGCTGTCGTCTTG
CTTAACTGCAACATAAGAAATCGTGATGTTTTGGAAGAAGGTTGTCAACAAATTTCTTTC
TATTTTATATTGTTTGTCATATTTTTATGTAGTTTGAAATGTTTAAATGTCCTCATATCA
AGATTAACAAATATAAATTTATGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1404, gnl|bosTau2|chr6 (24753911-24755327)
               

               
               1-1404, gnl|Hg17|chr4 (26700664-26702068)
               

               
               1-1404, gnl|Mm7|chr5 (53491833-53493233)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1404, gnl|bosTau2|chr6 (24753911-24755327)
               

               
               1-1404, gnl|Hg17|chr4 (26700664-26702068)
               

               
               1-1404, gnl|Mm7|chr5 (53491833-53493233)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ski (0.29347)
               

               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-1404, gnl\|bosTau2\|chr6 (24753911-24755327)
	1-1404, gnl\|Hg17\|chr4 (26700664-26702068)
	1-1404, gnl\|Mm7\|chr5 (53491833-53493233)

	ski (0.29347)
	fty (0.17584)
	liv (0.146284)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)