Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I17.5

Sequence:


               
               CATTGGTGGAATTAAGAAGGCGTGGCAGGAGAAGCGACAAGCCAACCGGGAAGATACGTG
GGCCGATGAGACCCAGGCTGGTAAAGGGACCTGCGCAACTCACCACTAGAGCCCTGGCTC
CTTCTTCTTGAGCCATGCATCTGAACTGACATACTATTGCCTTTTACTTGGAGTGGTTAC
CCGTGACTCAGGAATTGAGCTTCCAAAGATTTATTGAACAATCTGACTTAGTAGAGGAAC
TTAAATATGACTTTAATGAAAAATCTGAATTGAGACACACTGAGACACAGCGGCCTTTTG
TGTTTAACTATTATAAAAATGTCCTGGAGAAGAATAGCAAGCGCTACCAGGCCCTTGGCC
ATTTGCTTGAACAATACATTTATGAACTTTTGGAGAAAGTGTGCAAATTACAAAAGGTAT
ATATCCCACGAGAGGCTGATAAGGAAGCAAGAAGCTTCTTTTTCATGAGTGAGAGAGCAT
TAACAAATCATCATTCTGCTCTTCTTGTCCTTCTTCAAGACCATGGGGTCTTTAGAGCTG
GTCAGTGGAGTCAGCAGGCAATAATACACCATGGTCTCCAACATGGAAGTCAGATACCAT
GTATTCAAATGGCCTTGCAAGCACATTATGATGTAATTGTACTAAACCCCAATGACAATT
TTGTGGACCTAACGACAGAAAAAGAGTGGAAAGTCCTTTTAACACAAAATGTTGAGTCCT
CCTCCAGAAAAATGGTTCAGGCTGAGAGCTTTTTATCTCCCCAGCAGTCTCTCCAATGCA
TTCCAAAAACATGCAGCAACACCCCTGAAGAACACATGGCTTACATTTGGGATTCCTTCA
TTTCAAAGACTGAAGGCAAGGATGTTGCCTTCATTGTACATGGTTATGGAGGCTTGGTTT
TTATGGACTTGCTTGTTCGTAGAAAGTGGGAAGTGATGAACAAAGTATATGCTGTTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGGTGGAATTAAGAAGGCGTGGCAGGAGAAGCGACAAGCCAACCGGGAAGATACGTG
GGCCGATGAGACCCAGGCTGGTAAAGGGACCTGCGCAACTCACCACTAGAGCCCTGGCTC
CTTCTTCTTGAGCCATGCATCTGAACTGACATACTATTGCCTTTTACTTGGAGTGGTTAC
CCGTGACTCAGGAATTGAGCTTCCAAAGATTTATTGAACAATCTGACTTAGTAGAGGAAC
TTAAATATGACTTTAATGAAAAATCTGAATTGAGACACACTGAGACACAGCGGCCTTTTG
TGTTTAACTATTATAAAAATGTCCTGGAGAAGAATAGCAAGCGCTACCAGGCCCTTGGCC
ATTTGCTTGAACAATACATTTATGAACTTTTGGAGAAAGTGTGCAAATTACAAAAGGTAT
ATATCCCACGAGAGGCTGATAAGGAAGCAAGAAGCTTCTTTTTCATGAGTGAGAGAGCAT
TAACAAATCATCATTCTGCTCTTCTTGTCCTTCTTCAAGACCATGGGGTCTTTAGAGCTG
GTCAGTGGAGTCAGCAGGCAATAATACACCATGGTCTCCAACATGGAAGTCAGATACCAT
GTATTCAAATGGCCTTGCAAGCACATTATGATGTAATTGTACTAAACCCCAATGACAATT
TTGTGGACCTAACGACAGAAAAAGAGTGGAAAGTCCTTTTAACACAAAATGTTGAGTCCT
CCTCCAGAAAAATGGTTCAGGCTGAGAGCTTTTTATCTCCCCAGCAGTCTCTCCAATGCA
TTCCAAAAACATGCAGCAACACCCCTGAAGAACACATGGCTTACATTTGGGATTCCTTCA
TTTCAAAGACTGAAGGCAAGGATGTTGCCTTCATTGTACATGGTTATGGAGGCTTGGTTT
TTATGGACTTGCTTGTTCGTAGAAAGTGGGAAGTGATGAACAAAGTATATGCTGTTGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838375|ref|XP_602501.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838375|ref|XP_602501.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               539-658, - strand, RNAz p=0.992204
               

               
               819-960, + strand, RNAz p=0.973772

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-658, - strand, RNAz p=0.992204
               

               
               819-960, + strand, RNAz p=0.973772

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               145-960, gnl|bosTau2|chr11 (21802112-21801297)
               

               
               145-960, gnl|Hg17|chr3 (102723385-102724205)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-960, gnl|bosTau2|chr11 (21802112-21801297)
               

               
               145-960, gnl|Hg17|chr3 (102723385-102724205)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	539-658, - strand, RNAz p=0.992204
	819-960, + strand, RNAz p=0.973772

	145-960, gnl\|bosTau2\|chr11 (21802112-21801297)
	145-960, gnl\|Hg17\|chr3 (102723385-102724205)