Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I23.5

Sequence:


               
               GTGGAAAAGGCTTCACTTCTATTTCACGACTTAATAGACACCGAATAATTCATACTGGTG
AGAAGTTTTATAATTGTAATGAATGTGGTAAAGCCTTAAGTTCCCATTCAACACTCATTA
TTCATGAACGAATTCATACTGGAGAGAAACCATGTAAGTGTAAAGTGTGTGGGAAAGCCT
TCAGACAAAGTTCAGCACTCATTCAACATCAGAGAATGCACACTGGAGAAAGACCTTATA
AATGTAATGAGTGTGGGAAAACGTTCAGGTGTAACTCATCTCTTAGCAATCATCAGCGAA
TTCATACAGGAGAGAAACCATATCGATGCGAAGAATGTGGGATATCTTTTGGCCAAAGTT
CAGCTCTTATTCAGCATCGGAGGATTCACACAGGAGAGAAACCCTTCAAATGTAACACAT
GTGGGAAAACCTTTAGGCAAAGCTCATCACGTATTGCCCATCAGAGAATTCATACTGGAG
AGAAACCTTATGAATGTAACACATGTGGGAAACTTTTCAATCACAGATCATCACTTACTA
AGATTAGAGAAAAAGCAGGAGAAAAGAACCCCTAGAAAGTAGGTTTGCATGTGTGAAAGC
CTGAAACCAAAGTTCATCAGAATACATGAGAGTGATGTAGTAAGTGTAATGTATATGAAA
AAGTCAGTCCCTATTTAGTCCTCATCAAGTATTAAATTCCAAGGATAAATCTTGATTATG
TAATAATGAGGAAAGTGAAAAGTGTTCAAGCCTGTCAGACACTTTTATAATAACCTGAGA
TGAACAATTAATGGCTGGAGACATTGACTTTGGGCATTTGTTAAACAGTTGTGTTCTCTC
TACTGCAGTGTATGCTACATATCATATGTAATTGTTATAAACATCTGAGTGATGAGTGGA
GGTGTGCACTGGATTTCTCATTAAACTATAGACTGTTAACACTTTTTTTTTATAACTAAC
ATTATAATAGCATATAAAAGATGTTGTTTAAGAGATTATACATTTTTTTAGAGAAAAGGA
CCAAATAAAAAATAAAGATGAACTGTAAACTACCTCTCACTTTATGGGGTTTGTCCTTTT
CCTGACCTGATGTCAAACTTTATGCATGGATAGCATTTAAAAATAGAAATAAAAGTCTGT
TCTCATCGTTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAAAAGGCTTCACTTCTATTTCACGACTTAATAGACACCGAATAATTCATACTGGTG
AGAAGTTTTATAATTGTAATGAATGTGGTAAAGCCTTAAGTTCCCATTCAACACTCATTA
TTCATGAACGAATTCATACTGGAGAGAAACCATGTAAGTGTAAAGTGTGTGGGAAAGCCT
TCAGACAAAGTTCAGCACTCATTCAACATCAGAGAATGCACACTGGAGAAAGACCTTATA
AATGTAATGAGTGTGGGAAAACGTTCAGGTGTAACTCATCTCTTAGCAATCATCAGCGAA
TTCATACAGGAGAGAAACCATATCGATGCGAAGAATGTGGGATATCTTTTGGCCAAAGTT
CAGCTCTTATTCAGCATCGGAGGATTCACACAGGAGAGAAACCCTTCAAATGTAACACAT
GTGGGAAAACCTTTAGGCAAAGCTCATCACGTATTGCCCATCAGAGAATTCATACTGGAG
AGAAACCTTATGAATGTAACACATGTGGGAAACTTTTCAATCACAGATCATCACTTACTA
AGATTAGAGAAAAAGCAGGAGAAAAGAACCCCTAGAAAGTAGGTTTGCATGTGTGAAAGC
CTGAAACCAAAGTTCATCAGAATACATGAGAGTGATGTAGTAAGTGTAATGTATATGAAA
AAGTCAGTCCCTATTTAGTCCTCATCAAGTATTAAATTCCAAGGATAAATCTTGATTATG
TAATAATGAGGAAAGTGAAAAGTGTTCAAGCCTGTCAGACACTTTTATAATAACCTGAGA
TGAACAATTAATGGCTGGAGACATTGACTTTGGGCATTTGTTAAACAGTTGTGTTCTCTC
TACTGCAGTGTATGCTACATATCATATGTAATTGTTATAAACATCTGAGTGATGAGTGGA
GGTGTGCACTGGATTTCTCATTAAACTATAGACTGTTAACACTTTTTTTTTATAACTAAC
ATTATAATAGCATATAAAAGATGTTGTTTAAGAGATTATACATTTTTTTAGAGAAAAGGA
CCAAATAAAAAATAAAGATGAACTGTAAACTACCTCTCACTTTATGGGGTTTGTCCTTTT
CCTGACCTGATGTCAAACTTTATGCATGGATAGCATTTAAAAATAGAAATAAAAGTCTGT
TCTCATCGTTCAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-504, gnl|bosTau2|chr10 (8996401-8995907)
               

               
               1-504, gnl|Mm7|chr2 (127309832-127309394)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr10 (8996401-8995907)
               

               
               1-504, gnl|Mm7|chr2 (127309832-127309394)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

	1-504, gnl\|bosTau2\|chr10 (8996401-8995907)
	1-504, gnl\|Mm7\|chr2 (127309832-127309394)

	cte (0.29274)
	liv (0.292569)
	lin (0.291206)
	rec (0.17307)
	fco (0.157208)
	spl (0.143184)
	ste (0.135208)
	tra (0.123092)