Non-Coding RNA Search

Ss1.1-Pig4-TMW8053J12.5

Sequence:


               
               CTGTAGAGCACCTTTTCTTTCTTAGAGTAAGTAATCCAGTACAATATTTGTGAAACTGAA
TCATTAAAACTTTGGCTTCTCTTAGGAAAAGAAGAGTTCCTAGTCCTAGGTGTCCTATGG
GGAAATTTATTTTTTTTTTTTAATGTCCTGTTCCTTAATGCTGCAAATTATCAGTATTTA
CAAAGTAACTGATTTTGCACCACTTTTTTGTTACTGTGACCACAACAGAACAGTGTCTGC
TAGAATCTATCTGTGTAAAGTTATTAGAATGGTATCTGTCCATCTTAGCGATAATGAAGG
TCACAACTAACAACTTACAAATCAAGAGTTTGCCAGTTTGAATTCAGCATGGCTGTAGCT
GATTAAGAAATTTATATAATTACTCTTTGCTAGCCTCTCTTACTAATTGAATTAGTTATC
AGCCAGTAAAGTGAAACTCCCAAAGGATGTTTCAGCAGGTTTTAAGATCTCTTTCTAGAA
GCACCAGTTAGGAAAATAGCTCCAGAGAATACAGATGTATTTTATTCTATTTAATTGAAA
TGGCAGCCTACATTAAAATTGGTTTTCATAAGGCTGTCTTTACCAAAATCTGTGTAAAAT
AATTCATGTTTTTCTGCTGGAAGTAGAGAAAGCAGTCCAAGTTCCTTGAAATGCAACCAT
GCAAGATGTTTAGGAAGGCAGACTTGGCCGTGAGGCATCGTTCTGGTTCTTGTGGTCCAG
TGCCGGGTTATCTGGTTTTAGAAAACACTGCACCAAGTGGAAGAACGCTTTCCTTGCCAA
GCTGGATCTTAGAACTCGAAACAGCAAAACAGCTTCCACTCTGGCAGTGCCGTCGTCGCA
CTAGAGCCTTGGTATGGAAGACAGGGAGGGGTGCAGCGTGTCCAAGAAAACCCTGATGTG
TTACTATGGAATTGGAATCTAGGGATAGTTAACTTTGGGGTTTTTTGCTGTTTTTAAACA
AAAATGTGAAAACATTCAAAGTTAAAAAGTTGCATTTGAAGTTAGGATCATTTAATATAT
TCATATTACCAAAACTGTTATACTGGAAGTGGTTTCCTTTTATGTTATAAAGGTTTAATT
TTACATAAGTCAGAGTTACTCGAGGTGATTTTTTAACCCTTTAAAAAAGTGAAGATGTAT
ACAGTTGTTAACAATGCCATGGAAGCATTTCCTTTCTCCTGAGGAAAAGTAAATTTCTTA
TCAGAATATCTGGCTGGCCCTGTAATTTAAATTAAAATAAAATTTTGGAGAAACGGCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTAGAGCACCTTTTCTTTCTTAGAGTAAGTAATCCAGTACAATATTTGTGAAACTGAA
TCATTAAAACTTTGGCTTCTCTTAGGAAAAGAAGAGTTCCTAGTCCTAGGTGTCCTATGG
GGAAATTTATTTTTTTTTTTTAATGTCCTGTTCCTTAATGCTGCAAATTATCAGTATTTA
CAAAGTAACTGATTTTGCACCACTTTTTTGTTACTGTGACCACAACAGAACAGTGTCTGC
TAGAATCTATCTGTGTAAAGTTATTAGAATGGTATCTGTCCATCTTAGCGATAATGAAGG
TCACAACTAACAACTTACAAATCAAGAGTTTGCCAGTTTGAATTCAGCATGGCTGTAGCT
GATTAAGAAATTTATATAATTACTCTTTGCTAGCCTCTCTTACTAATTGAATTAGTTATC
AGCCAGTAAAGTGAAACTCCCAAAGGATGTTTCAGCAGGTTTTAAGATCTCTTTCTAGAA
GCACCAGTTAGGAAAATAGCTCCAGAGAATACAGATGTATTTTATTCTATTTAATTGAAA
TGGCAGCCTACATTAAAATTGGTTTTCATAAGGCTGTCTTTACCAAAATCTGTGTAAAAT
AATTCATGTTTTTCTGCTGGAAGTAGAGAAAGCAGTCCAAGTTCCTTGAAATGCAACCAT
GCAAGATGTTTAGGAAGGCAGACTTGGCCGTGAGGCATCGTTCTGGTTCTTGTGGTCCAG
TGCCGGGTTATCTGGTTTTAGAAAACACTGCACCAAGTGGAAGAACGCTTTCCTTGCCAA
GCTGGATCTTAGAACTCGAAACAGCAAAACAGCTTCCACTCTGGCAGTGCCGTCGTCGCA
CTAGAGCCTTGGTATGGAAGACAGGGAGGGGTGCAGCGTGTCCAAGAAAACCCTGATGTG
TTACTATGGAATTGGAATCTAGGGATAGTTAACTTTGGGGTTTTTTGCTGTTTTTAAACA
AAAATGTGAAAACATTCAAAGTTAAAAAGTTGCATTTGAAGTTAGGATCATTTAATATAT
TCATATTACCAAAACTGTTATACTGGAAGTGGTTTCCTTTTATGTTATAAAGGTTTAATT
TTACATAAGTCAGAGTTACTCGAGGTGATTTTTTAACCCTTTAAAAAAGTGAAGATGTAT
ACAGTTGTTAACAATGCCATGGAAGCATTTCCTTTCTCCTGAGGAAAAGTAAATTTCTTA
TCAGAATATCTGGCTGGCCCTGTAATTTAAATTAAAATAAAATTTTGGAGAAACGGCAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-239, - strand, RNAz p=0.963212
               

               
               320-438, - strand, RNAz p=0.507092

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.963212
               

               
               320-438, - strand, RNAz p=0.507092

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1254, gnl|bosTau2|chr2 (73312458-73311213)
               

               
               1-1254, gnl|Hg17|chr2 (231510094-231511291)
               

               
               1-1254, gnl|Mm7|chr1 (85751076-85752295)
               


               
               571-1128, gnl|bosTau2|chr14 (21543206-21543758)
               

               
               571-1128, gnl|Hg17|chr21 (31596951-31596375)
               

               
               571-1128, gnl|Mm7|chr1 (85751624-85752149)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1254, gnl|bosTau2|chr2 (73312458-73311213)
               

               
               1-1254, gnl|Hg17|chr2 (231510094-231511291)
               

               
               1-1254, gnl|Mm7|chr1 (85751076-85752295)
               


               
               571-1128, gnl|bosTau2|chr14 (21543206-21543758)
               

               
               571-1128, gnl|Hg17|chr21 (31596951-31596375)
               

               
               571-1128, gnl|Mm7|chr1 (85751624-85752149)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	80-239, - strand, RNAz p=0.963212
	320-438, - strand, RNAz p=0.507092

	1-1254, gnl\|bosTau2\|chr2 (73312458-73311213)
	1-1254, gnl\|Hg17\|chr2 (231510094-231511291)
	1-1254, gnl\|Mm7\|chr1 (85751076-85752295)

	571-1128, gnl\|bosTau2\|chr14 (21543206-21543758)
	571-1128, gnl\|Hg17\|chr21 (31596951-31596375)
	571-1128, gnl\|Mm7\|chr1 (85751624-85752149)

	sme (0.305437)
	ldo (0.291008)
	ecc (0.23007)
	fty (0.17584)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)
	spc (0.113366)