Non-Coding RNA Search

Ss1.1-Pig4-TMW8053J13.5

Sequence:


               
               CATGATAGACCAGAGGGGCAAGTCCAGAGGCCAGCCACACAGAGACAGGATATTCCATTC
CCTTCCCAAGGCTGTGTTGTTTTTTTCATGACCAATAATCATATTTCATTTTATTTCACA
TATTTTTGAGCTCTTATCTATAAGGCTCTCTGTTCCTCCACGTTATTGTTTGGAGGATAA
GCTTAGCTGTTGGATCCTGTCACAATCTAAGTGTTGCCAAGCAAGCTGGGAAGGCTGTCC
CATGGACTCCTAAGCTTCTTGCCAGACCATGTTGGGCTAAGTTTTTAAACTACAACCCTA
GGTCAACTTACCACTGTCCTCCAATTCTAGGTGTGCCAACCCAGCTGCTACCTACCCAGT
GTGCTCTCGAGCCCCTCCCACCATGTTTCTAGGTGCTGAGCGGGTTATGTGTGCATATAA
ATATCAGTATCAGCTGCCTTTTGGCCTTTCCTTCCTTGACGACTTGTATTTAGACTAGAG
TCTGAGGGTGGAGGTATATACAGTGACAGGGATAAAAGATTGAGATAGCAGGAAATGCAG
CCTTCGGTGGGAAGCTAGATTGTAAAATTAGTGCGGATTTTCTGATTCCTTGTATAATTA
TTTTTTTTCCACTTAATTTAATGATTTTTATTTTTCCATTGGAGTTGATTTACAGTGTTC
TATCGATTTCTACTGTACAGCAAAGTGACCTAGTCATACTGCATAATTCAATTGTGAAGT
ACAGTTTATATACCTTTTCTGAAATGTGTAATGTTGAAAGCAGCTTTACAGTTTCACTAT
TTAGTATCCTCTTCCTGTGATGATTTCATCTGTTTAGAGCAAGTGTTCGTAAACTTTTTT
CATGCCATGGACCTTTTGAATAATCTGGTGAAGTCTATGGCCTCCTTCTCAGAATGTTTT
CACATGCATAAAACTAAACACGAAGGATTGCAAAGGCAACTAATATTAAAATATGGTTAC
TAGGGTATTTTCAAAATTTTAGGATTATGTATATTTGTACTTTATTCACACATAAAATAA
GGCCTAGTGGCGGTTCTAAAACTACTGGAACTTCAAAGTAATACCAAATTATAATTTTGA
AATATCTGCAACAACTGTAATGTGATATCTAAATGGCTGATTTCTGTTGGTGAAGTCACA
GGTACTGCTAATAATATTGTGGATCATTGCTTATGTTCATAATTGAAGGAAATGCTATAT
ATATTTCAGTAAGAAGTTAGCGAAGACATATTTTTTTTCTCATTCACGTTCGCTGAACCC
CTGGTTTAGAGGTTGTCTGATTTTACTTTGTCATTTTAAGAGTAAACTGTTTTTGTTTGC
TTGTTCAAATCTAAATTATTTGGGCTTATTTTACAGTTTTGTATATGCTTTTTATACTTG
AATTGTTTTGCAACATTGCAGCAGTAATTGAAGGCTTGGGTGGAATGAAATCAGCAACTG
ATTAGAAATGAGAGGTTTCAACAAAAGCTCTTGATAATGTTACCTCAAGATATATCATTA
TGCAGTCATTATTGGAGCCCTACATCTGATAATTTCATAATACTTAAGTGTGTAAACTTC
AATAAAATTTGGATCATCTACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGATAGACCAGAGGGGCAAGTCCAGAGGCCAGCCACACAGAGACAGGATATTCCATTC
CCTTCCCAAGGCTGTGTTGTTTTTTTCATGACCAATAATCATATTTCATTTTATTTCACA
TATTTTTGAGCTCTTATCTATAAGGCTCTCTGTTCCTCCACGTTATTGTTTGGAGGATAA
GCTTAGCTGTTGGATCCTGTCACAATCTAAGTGTTGCCAAGCAAGCTGGGAAGGCTGTCC
CATGGACTCCTAAGCTTCTTGCCAGACCATGTTGGGCTAAGTTTTTAAACTACAACCCTA
GGTCAACTTACCACTGTCCTCCAATTCTAGGTGTGCCAACCCAGCTGCTACCTACCCAGT
GTGCTCTCGAGCCCCTCCCACCATGTTTCTAGGTGCTGAGCGGGTTATGTGTGCATATAA
ATATCAGTATCAGCTGCCTTTTGGCCTTTCCTTCCTTGACGACTTGTATTTAGACTAGAG
TCTGAGGGTGGAGGTATATACAGTGACAGGGATAAAAGATTGAGATAGCAGGAAATGCAG
CCTTCGGTGGGAAGCTAGATTGTAAAATTAGTGCGGATTTTCTGATTCCTTGTATAATTA
TTTTTTTTCCACTTAATTTAATGATTTTTATTTTTCCATTGGAGTTGATTTACAGTGTTC
TATCGATTTCTACTGTACAGCAAAGTGACCTAGTCATACTGCATAATTCAATTGTGAAGT
ACAGTTTATATACCTTTTCTGAAATGTGTAATGTTGAAAGCAGCTTTACAGTTTCACTAT
TTAGTATCCTCTTCCTGTGATGATTTCATCTGTTTAGAGCAAGTGTTCGTAAACTTTTTT
CATGCCATGGACCTTTTGAATAATCTGGTGAAGTCTATGGCCTCCTTCTCAGAATGTTTT
CACATGCATAAAACTAAACACGAAGGATTGCAAAGGCAACTAATATTAAAATATGGTTAC
TAGGGTATTTTCAAAATTTTAGGATTATGTATATTTGTACTTTATTCACACATAAAATAA
GGCCTAGTGGCGGTTCTAAAACTACTGGAACTTCAAAGTAATACCAAATTATAATTTTGA
AATATCTGCAACAACTGTAATGTGATATCTAAATGGCTGATTTCTGTTGGTGAAGTCACA
GGTACTGCTAATAATATTGTGGATCATTGCTTATGTTCATAATTGAAGGAAATGCTATAT
ATATTTCAGTAAGAAGTTAGCGAAGACATATTTTTTTTCTCATTCACGTTCGCTGAACCC
CTGGTTTAGAGGTTGTCTGATTTTACTTTGTCATTTTAAGAGTAAACTGTTTTTGTTTGC
TTGTTCAAATCTAAATTATTTGGGCTTATTTTACAGTTTTGTATATGCTTTTTATACTTG
AATTGTTTTGCAACATTGCAGCAGTAATTGAAGGCTTGGGTGGAATGAAATCAGCAACTG
ATTAGAAATGAGAGGTTTCAACAAAAGCTCTTGATAATGTTACCTCAAGATATATCATTA
TGCAGTCATTATTGGAGCCCTACATCTGATAATTTCATAATACTTAAGTGTGTAAACTTC
AATAAAATTTGGATCATCTACACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               31-497, gnl|bosTau2|chr3 (61981470-61980992)
               


               
               1026-1584, gnl|bosTau2|chr3 (61979855-61979306)
               

               
               1026-1584, gnl|Hg17|chr1 (54204933-54204384)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-497, gnl|bosTau2|chr3 (61981470-61980992)
               


               
               1026-1584, gnl|bosTau2|chr3 (61979855-61979306)
               

               
               1026-1584, gnl|Hg17|chr1 (54204933-54204384)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

Help | Less info


               
               ret (0.901133)
               

               
               kid (0.648677)
               

               
               aor (0.585823)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               kid (0.648677)
               

               
               aor (0.585823)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	31-497, gnl\|bosTau2\|chr3 (61981470-61980992)

	1026-1584, gnl\|bosTau2\|chr3 (61979855-61979306)
	1026-1584, gnl\|Hg17\|chr1 (54204933-54204384)

	ret (0.901133)
	kid (0.648677)
	aor (0.585823)
	pro (0.512033)
	tra (0.492368)
	mga (0.480615)
	elu (0.385356)
	cbl (0.344392)
	eye (0.341006)
	fco (0.314416)
	fat (0.294855)
	lin (0.291206)
	ldo (0.291008)
	csk (0.281492)
	fce (0.271592)
	pla (0.267344)
	sug (0.254582)
	mgp (0.230681)
	tes (0.207814)
	eje (0.197668)
	gul (0.177588)
	fty (0.17584)
	lun (0.150489)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	pgl (0.118483)
	cty (0.10408)