Ss1.1-Pig4-TMW8053J18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATAAAATGGTCCAAACTTCTCAAGGGAGGCGGTGGTGTCCAGAAGAGTATGACGGTG AAGCGCTACATCCGGAAGGGTGTCCCGCTGGAGCACCGCGCCCGCGTCTGGATGGGGGTG AGCGGAGCCCAGGCCCAGATGGACCGGAACCCCGGCTACTACCACCGTCTCCTCCAGGGA GAGAGGAATGACAGCCTGGAGGAGGCCATCAGGACAGACGTGACCAGGACCTTCCCCGAC AACGTGAGGTTCCGGAAGGGCGCCGAGCCCTGCCTGCAGAGAACCCTGTACAACGTGCTG CTGGCCTACGGGCACCACAACCGCGGCGTGGGGTACTGCCAGGGCATGAACTTCATAGCG GGGTATCTGATTCTGATCACGAAGAACGAAGAGGAGGCCTTCTGGCTGCTGGACGCCCTC GTCGGCAGGATCCTTCCGGACTATTACAGCCCCTCGATGCTGGGCCTGCGGATGGACCAG GAGGTGCTCGGCGAGCTGGTGAGGACCAAGCTGCCGGCGGTGGCGGCCCTGATGGACGGG CATGGCGTGCTGTGGACGCTGGTCGTGTCGCGCTGGTTCATCTGCCTGTTCGTGGACGTG CTGCCCGTGGAGACGGTGCTCCGCGTCTGGGATTGTCTGTTCAGCGAAGGCTCCAAGATC ATCTTCCGCGTGGCCCTGACCCTCATCAAGCAGCACCAGGCCTTCATCCTGGAGGCCACC AGCGTCCCCGACATCTGTGAGCGGTTCAAGGAGATCACCAGGGGGGGCTTCGTGACCGAG TGCCACGCCTTCATGCAGAAAATATTCTCGGAGCCGGGGAGCCTGTCCATGGCCCACATC ACCAGGCTGAGGGAGCGCTGCCGGGCTAAGCTGCTGGCGCAGGGGTGACCCGTCTGCGTG GCTTCCCCCAGTGCTGAGGGCTCCGAGCTGCTGCTGCGCTGCAGCCCGGAGTCTTCAAAG AGTGGGTTCAAGCGCACACTCTTAACTCCTCATTGTGGGCTGTACAGCCATGTTTCTAGA AATATATTTTTACCTGTGACACGGAGAACCTATAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATAAAATGGTCCAAACTTCTCAAGGGAGGCGGTGGTGTCCAGAAGAGTATGACGGTG AAGCGCTACATCCGGAAGGGTGTCCCGCTGGAGCACCGCGCCCGCGTCTGGATGGGGGTG AGCGGAGCCCAGGCCCAGATGGACCGGAACCCCGGCTACTACCACCGTCTCCTCCAGGGA GAGAGGAATGACAGCCTGGAGGAGGCCATCAGGACAGACGTGACCAGGACCTTCCCCGAC AACGTGAGGTTCCGGAAGGGCGCCGAGCCCTGCCTGCAGAGAACCCTGTACAACGTGCTG CTGGCCTACGGGCACCACAACCGCGGCGTGGGGTACTGCCAGGGCATGAACTTCATAGCG GGGTATCTGATTCTGATCACGAAGAACGAAGAGGAGGCCTTCTGGCTGCTGGACGCCCTC GTCGGCAGGATCCTTCCGGACTATTACAGCCCCTCGATGCTGGGCCTGCGGATGGACCAG GAGGTGCTCGGCGAGCTGGTGAGGACCAAGCTGCCGGCGGTGGCGGCCCTGATGGACGGG CATGGCGTGCTGTGGACGCTGGTCGTGTCGCGCTGGTTCATCTGCCTGTTCGTGGACGTG CTGCCCGTGGAGACGGTGCTCCGCGTCTGGGATTGTCTGTTCAGCGAAGGCTCCAAGATC ATCTTCCGCGTGGCCCTGACCCTCATCAAGCAGCACCAGGCCTTCATCCTGGAGGCCACC AGCGTCCCCGACATCTGTGAGCGGTTCAAGGAGATCACCAGGGGGGGCTTCGTGACCGAG TGCCACGCCTTCATGCAGAAAATATTCTCGGAGCCGGGGAGCCTGTCCATGGCCCACATC ACCAGGCTGAGGGAGCGCTGCCGGGCTAAGCTGCTGGCGCAGGGGTGACCCGTCTGCGTG GCTTCCCCCAGTGCTGAGGGCTCCGAGCTGCTGCTGCGCTGCAGCCCGGAGTCTTCAAAG AGTGGGTTCAAGCGCACACTCTTAACTCCTCATTGTGGGCTGTACAGCCATGTTTCTAGA AATATATTTTTACCTGTGACACGGAGAACCTATAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 51-231, gnl|bosTau2|chr12 (46726149-46726327) | |
| 51-231, gnl|canFam2|chr22 (63668082-63668269) | |
| 51-231, gnl|danRer3|chr9 (31327166-31327351) | |
| 51-231, gnl|echTel1|scaffold_79922 (2037-1795) | |
| 51-231, gnl|fr1|chrUn (163017861-163017664) | |
| 51-231, gnl|hg17|chr13 (113057618-113057820) | |
| 51-231, gnl|Hg17|chr13 (113057808-113057633) | |
| 51-231, gnl|mm7|chr8 (13166248-13166449) | |
| 51-231, gnl|Mm7|chr8 (13166436-13166267) | |
| 51-231, gnl|oryCun1|scaffold_112909 (1264-1448) | |
| 51-231, gnl|panTro1|chr14 (96678098-96678300) | |
| 51-231, gnl|rheMac2|chr17 (93480629-93480831) | |
| 51-231, gnl|rn3|chr16 (81199398-81199197) | |
| 51-231, gnl|tetNig1|chr5 (8292426-8292256) | |
| 600-798, gnl|bosTau2|chr12 (46734956-46735154) | |
| 600-798, gnl|canFam2|chr22 (63658143-63658341) | |
| 600-798, gnl|danRer3|chrUn (104913293-104913099) | |
| 600-798, gnl|dasNov1|scaffold_47179 (8029-7811) | |
| 600-798, gnl|echTel1|scaffold_276371 (39606-39413) | |
| 600-798, gnl|fr1|chrUn (163019300-163019106) | |
| 600-798, gnl|galGal2|chr1 (130489676-130489482) | |
| 600-798, gnl|hg17|chr13 (113027976-113028170) | |
| 600-798, gnl|Hg17|chr13 (113028180-113027977) | |
| 600-798, gnl|loxAfr1|scaffold_16869 (37084-37282) | |
| 600-798, gnl|mm7|chr8 (13153538-13153736) | |
| 600-798, gnl|Mm7|chr8 (13153741-13153543) | |
| 600-798, gnl|monDom2|scaffold_11 (32052444-32052250) | |
| 600-798, gnl|panTro1|chr14 (96649662-96649860) | |
| 600-798, gnl|rheMac2|chr17 (93454209-93454407) | |
| 600-798, gnl|rn3|chr16 (81209200-81209002) | |
| 600-798, gnl|tetNig1|chr5 (8293867-8293673) | |
| 600-798, gnl|xenTro1|scaffold_563 (832450-832644) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-231, gnl|bosTau2|chr12 (46726149-46726327) | |
| 51-231, gnl|canFam2|chr22 (63668082-63668269) | |
| 51-231, gnl|danRer3|chr9 (31327166-31327351) | |
| 51-231, gnl|echTel1|scaffold_79922 (2037-1795) | |
| 51-231, gnl|fr1|chrUn (163017861-163017664) | |
| 51-231, gnl|hg17|chr13 (113057618-113057820) | |
| 51-231, gnl|Hg17|chr13 (113057808-113057633) | |
| 51-231, gnl|mm7|chr8 (13166248-13166449) | |
| 51-231, gnl|Mm7|chr8 (13166436-13166267) | |
| 51-231, gnl|oryCun1|scaffold_112909 (1264-1448) | |
| 51-231, gnl|panTro1|chr14 (96678098-96678300) | |
| 51-231, gnl|rheMac2|chr17 (93480629-93480831) | |
| 51-231, gnl|rn3|chr16 (81199398-81199197) | |
| 51-231, gnl|tetNig1|chr5 (8292426-8292256) | |
| 600-798, gnl|bosTau2|chr12 (46734956-46735154) | |
| 600-798, gnl|canFam2|chr22 (63658143-63658341) | |
| 600-798, gnl|danRer3|chrUn (104913293-104913099) | |
| 600-798, gnl|dasNov1|scaffold_47179 (8029-7811) | |
| 600-798, gnl|echTel1|scaffold_276371 (39606-39413) | |
| 600-798, gnl|fr1|chrUn (163019300-163019106) | |
| 600-798, gnl|galGal2|chr1 (130489676-130489482) | |
| 600-798, gnl|hg17|chr13 (113027976-113028170) | |
| 600-798, gnl|Hg17|chr13 (113028180-113027977) | |
| 600-798, gnl|loxAfr1|scaffold_16869 (37084-37282) | |
| 600-798, gnl|mm7|chr8 (13153538-13153736) | |
| 600-798, gnl|Mm7|chr8 (13153741-13153543) | |
| 600-798, gnl|monDom2|scaffold_11 (32052444-32052250) | |
| 600-798, gnl|panTro1|chr14 (96649662-96649860) | |
| 600-798, gnl|rheMac2|chr17 (93454209-93454407) | |
| 600-798, gnl|rn3|chr16 (81209200-81209002) | |
| 600-798, gnl|tetNig1|chr5 (8293867-8293673) | |
| 600-798, gnl|xenTro1|scaffold_563 (832450-832644) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| eje (0.0988338) |