Ss1.1-Pig4-TMW8053J19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACAATGTGAATGTCAGCATAGAAAGTAATGAAAGCACATTAATTCAAGTAAAAAGAGG GCCGGAGAGAAGGGAAAGTGGACGTCAGCTCCTTTACGGAGACTTTTTGTCTTGATTTAT GCTCCTTGTTTTTTTTTTTTTGCCGGACACGCAGTGCAGAACTACCGATGTGAATGCGGA CTTAAGTCCGCCTCTGGCCGGGTGTGGAGTTGGTAGTGAAGATTTGCTCATCTTAGCTGG CATCTTCCCTCAGCGGAGCGGCTTTCTGTGAACATGATTTGTACCTTACTACGAGCTGTA CGGTGCACGGGAAAGCTGCACAGCTTCTCGGGGAAGCAGTTGTTTTTGCCACACTTTGTA CTTAACAAAGCTTGCTTGAAGACTGTGCCCAGTTTGAGGTGGGCTCTGCAAGAGCAGAAG ACGGTACGACCTAGGTGTATTTGGGGAGTCACCCAGAAGACCATCTGGACGCAAGGACAG AGCACGCAGAGAGCGAAAGAGGACAGCGACAAACAAGTGTCTGTGCACAGAAGTCAGGGC GGGGATACTGCCGTCTCAACGTCACAGAAAGTAAAAGAAGCTGGAAGAGACTTGACCTAT CTAGTAGTGGTACTTGTTGGAATCACCATTACAGGTGGCTTGTTCTACACGATCTTCAGA GAACTTTTTTCCTCATCTAGTCCTAATAAGATATATGGAAAAGCCCTAGAAAAATGCAGA TCACATCCTGAGGTCATCAGTGTCTTTGGCGAGCCGGTCAAAGGCTATGGGGAGACAACG AGACGTGGTCGACGGCAGCACGTCAGTTTTATTGAATACGTAAAAGATGGGCTGAAGCAC ATGCGTGTGAAGTTCTACATCCAGGGCTCTGAGCCTGGGAAGCAAGGAACTGTGCACCTT GAAGTGAAAGAGAATCCAGAAAGTGGCGAATATGAATTTCGATATATATTTGTAGAACTG GAACCCTATTCTAGAACTATTGTCATTGAAGATAATCGATCCTAAGACAACTAAAAGAGC AAGCAAGTCTGTGTTTCCTGATGGACGTGGAAAGGTGCAGGCTCTGATGTTCACAGCCCT CGTCTGAGTCTATTTTAAATAAAACAAGAAAGAGTCTAGCTTATAAAAATGAAGGCAACT GGGTAGTTGTTGCATTTAAACAAACTGAATTAGAGGTTTTCTTGTAGAGTAAAAAATCAT GAAATAGAGCATACTTTACGTTATCTCATTGACTTACTGATCACGGGCAGTGTTTCTGCT CTACTTAACATCTTTTATGATAAATTTTTGGTATTAAAAACTTTGCACCATGTAAATAAG AAAATAGAGTTCAGCATTTTATGATTTTTTTTATGTTATGTAACTATAAAATCTGTGAAA TAAAATTAAAGCTAACAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACAATGTGAATGTCAGCATAGAAAGTAATGAAAGCACATTAATTCAAGTAAAAAGAGG GCCGGAGAGAAGGGAAAGTGGACGTCAGCTCCTTTACGGAGACTTTTTGTCTTGATTTAT GCTCCTTGTTTTTTTTTTTTTGCCGGACACGCAGTGCAGAACTACCGATGTGAATGCGGA CTTAAGTCCGCCTCTGGCCGGGTGTGGAGTTGGTAGTGAAGATTTGCTCATCTTAGCTGG CATCTTCCCTCAGCGGAGCGGCTTTCTGTGAACATGATTTGTACCTTACTACGAGCTGTA CGGTGCACGGGAAAGCTGCACAGCTTCTCGGGGAAGCAGTTGTTTTTGCCACACTTTGTA CTTAACAAAGCTTGCTTGAAGACTGTGCCCAGTTTGAGGTGGGCTCTGCAAGAGCAGAAG ACGGTACGACCTAGGTGTATTTGGGGAGTCACCCAGAAGACCATCTGGACGCAAGGACAG AGCACGCAGAGAGCGAAAGAGGACAGCGACAAACAAGTGTCTGTGCACAGAAGTCAGGGC GGGGATACTGCCGTCTCAACGTCACAGAAAGTAAAAGAAGCTGGAAGAGACTTGACCTAT CTAGTAGTGGTACTTGTTGGAATCACCATTACAGGTGGCTTGTTCTACACGATCTTCAGA GAACTTTTTTCCTCATCTAGTCCTAATAAGATATATGGAAAAGCCCTAGAAAAATGCAGA TCACATCCTGAGGTCATCAGTGTCTTTGGCGAGCCGGTCAAAGGCTATGGGGAGACAACG AGACGTGGTCGACGGCAGCACGTCAGTTTTATTGAATACGTAAAAGATGGGCTGAAGCAC ATGCGTGTGAAGTTCTACATCCAGGGCTCTGAGCCTGGGAAGCAAGGAACTGTGCACCTT GAAGTGAAAGAGAATCCAGAAAGTGGCGAATATGAATTTCGATATATATTTGTAGAACTG GAACCCTATTCTAGAACTATTGTCATTGAAGATAATCGATCCTAAGACAACTAAAAGAGC AAGCAAGTCTGTGTTTCCTGATGGACGTGGAAAGGTGCAGGCTCTGATGTTCACAGCCCT CGTCTGAGTCTATTTTAAATAAAACAAGAAAGAGTCTAGCTTATAAAAATGAAGGCAACT GGGTAGTTGTTGCATTTAAACAAACTGAATTAGAGGTTTTCTTGTAGAGTAAAAAATCAT GAAATAGAGCATACTTTACGTTATCTCATTGACTTACTGATCACGGGCAGTGTTTCTGCT CTACTTAACATCTTTTATGATAAATTTTTGGTATTAAAAACTTTGCACCATGTAAATAAG AAAATAGAGTTCAGCATTTTATGATTTTTTTTATGTTATGTAACTATAAAATCTGTGAAA TAAAATTAAAGCTAACAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-577, gnl|bosTau2|chr24 (5057780-5058355) | |
| 8-577, gnl|Hg17|chr18 (69966770-69967330) | |
| 8-577, gnl|Mm7|chr18 (85300618-85300131) | |
| 629-734, gnl|bosTau2|chr24 (5060338-5060443) | |
| 629-734, gnl|canFam2|chr1 (8180104-8179961) | |
| 629-734, gnl|danRer3|chrNA (96550857-96550985) | |
| 629-734, gnl|dasNov1|scaffold_172392 (3661-3518) | |
| 629-734, gnl|fr1|chrUn (243779830-243779704) | |
| 629-734, gnl|galGal2|chr2 (91872351-91872223) | |
| 629-734, gnl|hg17|chr18 (69973498-69973640) | |
| 629-734, gnl|Hg17|chr18 (69973516-69973620) | |
| 629-734, gnl|loxAfr1|scaffold_27665 (21175-21318) | |
| 629-734, gnl|mm7|chr18 (85298462-85298305) | |
| 629-734, gnl|Mm7|chr18 (85298430-85298325) | |
| 629-734, gnl|monDom2|scaffold_3 (127363676-127363538) | |
| 629-734, gnl|oryCun1|scaffold_197659 (8433-8573) | |
| 629-734, gnl|panTro1|chr17 (67141848-67141990) | |
| 629-734, gnl|rheMac2|chr18 (67630155-67630297) | |
| 629-734, gnl|rn3|chr18 (81599928-81599797) | |
| 629-734, gnl|tetNig1|chr6 (1611407-1611281) | |
| 629-734, gnl|xenTro1|scaffold_1076 (48510-48641) | |
| 911-1398, gnl|bosTau2|chr24 (5063054-5063517) | |
| 911-1398, gnl|Hg17|chr18 (69976589-69977063) | |
| 911-1398, gnl|Mm7|chr18 (85296880-85296419) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-577, gnl|bosTau2|chr24 (5057780-5058355) | |
| 8-577, gnl|Hg17|chr18 (69966770-69967330) | |
| 8-577, gnl|Mm7|chr18 (85300618-85300131) | |
| 629-734, gnl|bosTau2|chr24 (5060338-5060443) | |
| 629-734, gnl|canFam2|chr1 (8180104-8179961) | |
| 629-734, gnl|danRer3|chrNA (96550857-96550985) | |
| 629-734, gnl|dasNov1|scaffold_172392 (3661-3518) | |
| 629-734, gnl|fr1|chrUn (243779830-243779704) | |
| 629-734, gnl|galGal2|chr2 (91872351-91872223) | |
| 629-734, gnl|hg17|chr18 (69973498-69973640) | |
| 629-734, gnl|Hg17|chr18 (69973516-69973620) | |
| 629-734, gnl|loxAfr1|scaffold_27665 (21175-21318) | |
| 629-734, gnl|mm7|chr18 (85298462-85298305) | |
| 629-734, gnl|Mm7|chr18 (85298430-85298325) | |
| 629-734, gnl|monDom2|scaffold_3 (127363676-127363538) | |
| 629-734, gnl|oryCun1|scaffold_197659 (8433-8573) | |
| 629-734, gnl|panTro1|chr17 (67141848-67141990) | |
| 629-734, gnl|rheMac2|chr18 (67630155-67630297) | |
| 629-734, gnl|rn3|chr18 (81599928-81599797) | |
| 629-734, gnl|tetNig1|chr6 (1611407-1611281) | |
| 629-734, gnl|xenTro1|scaffold_1076 (48510-48641) | |
| 911-1398, gnl|bosTau2|chr24 (5063054-5063517) | |
| 911-1398, gnl|Hg17|chr18 (69976589-69977063) | |
| 911-1398, gnl|Mm7|chr18 (85296880-85296419) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fco (0.471624) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.471624) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eep (0.122564) | |
| pgl (0.118483) |