Ss1.1-Pig4-TMW8053J20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGAATCAAACCAGATGAGCAGAGAGCCTGTGAATCCGGCCCTTGCCCTCAGTGGGCT TACGGCAGCTGGGGAGAGTGTTCTAAGCTCTGTGGCGGAGGCTTGCGAACAAGGCTTGTG GTCTGTCAGAGGCCCAGCGGGGAACGGTTTCCAGATCTGAGCTGTGAAATTCTCGATAAG CCTCCGGATCGAGAGCAGTGTAACACCCAGGCTTGTCCTCAAGACCCTGCTTGGAGTACT GGCCCTTGGAGTTCGTGTTCTGTCTCTTGTGGTCGAGGGCATAAACAACGAAATGTTTAC TGCATGGCAAAAGATGGAAGCCATTTAGAAGGTGATTACTGTAAACACCTTCCTAAGCCA AATGGGCACAGAAAGTGCCGAGGAGGACGATGCCCCAAGTGGAAGGCTGGCGCCTGGAGT CAGTGCACCAAGACTTGTGGCGAAGGTTCCAGGTACCGCAAGGTGGTATGCGTGGATGAG GACAAAGGTGGTGAGGTTCATGGCGTGCACTGTGACATGAGCACACGGCCTGCGGACCGC GAGAGCTGTAGTTTGCAACCCTGCGAGTATGTGTGGATCACAGGAGAATGGTCAGAGTGC TCAGTGACCTGTGGAAAGGGCTACAGACAAAGGCTTGTCTCCTGTAGTGAGATTTATACC GGCAAGGAGAATTACGAGTACAGCTACCAAACCACCATCAACTGCCCGGGCACGCAGCCG CCCAGCGTCCAGCCCTGCTACCTGCGGGAGTGCCCGGTCTCAGCCTCCTGGAGAGTCGGC AACTGGGGGAGTTGCTCTGTGTCTTGTGGCGTCGGAGTGATGCACAGATCCGTGCAGTGT CTAACCAATGAAGACCAGCCCAGCCACTTATGCCCTGCTGATCTGAAGCCAGAAGAAAGA AAAACCTGCCAGAATATCTATAACTGCGAGTTGCCCCAGAACTGCAAGGAAGTCAAAAGG CTGAAAGGTGCTGGTGAAGATGGGGAGTATTTCCTGATTGTCATGGGAAAGCTCCTGAAG GTGTTCTGTGCTGGAATGCACTCTGACCACCCCAAGGAGTACATGACACTGGTTCACGGC GACTCTGAGAATTTCTCTGAGGTTTATGGGCACAGGTTGCACAACCCAACCGAATGTCCC TACAACGGAAGCCGGCGTGATGACTGTCAGTGTCGGAAGGACTACACGGCTGCTGGGTTT TCCAGCTTCCAGAAGATCAGAATAGACCTGACCACCATGCAGATCATAACCACCGACTTA CAGTTTGCCCGAACAAGCGAAGGACATCCTGTACCTTTTGCCACCGCTGGGGACTGCTAC AGCGCTGCCAAGTGCCCACAGGGTCGTTTCAGCATCAACCTTTATGGAACTGGCCTGTCT CTAGCTGAATCTGCCAGATGGATCTCTCAAGGGAATTATGCTGTCTCTGACATCAAGAAG TCCCCGGATGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGAATCAAACCAGATGAGCAGAGAGCCTGTGAATCCGGCCCTTGCCCTCAGTGGGCT TACGGCAGCTGGGGAGAGTGTTCTAAGCTCTGTGGCGGAGGCTTGCGAACAAGGCTTGTG GTCTGTCAGAGGCCCAGCGGGGAACGGTTTCCAGATCTGAGCTGTGAAATTCTCGATAAG CCTCCGGATCGAGAGCAGTGTAACACCCAGGCTTGTCCTCAAGACCCTGCTTGGAGTACT GGCCCTTGGAGTTCGTGTTCTGTCTCTTGTGGTCGAGGGCATAAACAACGAAATGTTTAC TGCATGGCAAAAGATGGAAGCCATTTAGAAGGTGATTACTGTAAACACCTTCCTAAGCCA AATGGGCACAGAAAGTGCCGAGGAGGACGATGCCCCAAGTGGAAGGCTGGCGCCTGGAGT CAGTGCACCAAGACTTGTGGCGAAGGTTCCAGGTACCGCAAGGTGGTATGCGTGGATGAG GACAAAGGTGGTGAGGTTCATGGCGTGCACTGTGACATGAGCACACGGCCTGCGGACCGC GAGAGCTGTAGTTTGCAACCCTGCGAGTATGTGTGGATCACAGGAGAATGGTCAGAGTGC TCAGTGACCTGTGGAAAGGGCTACAGACAAAGGCTTGTCTCCTGTAGTGAGATTTATACC GGCAAGGAGAATTACGAGTACAGCTACCAAACCACCATCAACTGCCCGGGCACGCAGCCG CCCAGCGTCCAGCCCTGCTACCTGCGGGAGTGCCCGGTCTCAGCCTCCTGGAGAGTCGGC AACTGGGGGAGTTGCTCTGTGTCTTGTGGCGTCGGAGTGATGCACAGATCCGTGCAGTGT CTAACCAATGAAGACCAGCCCAGCCACTTATGCCCTGCTGATCTGAAGCCAGAAGAAAGA AAAACCTGCCAGAATATCTATAACTGCGAGTTGCCCCAGAACTGCAAGGAAGTCAAAAGG CTGAAAGGTGCTGGTGAAGATGGGGAGTATTTCCTGATTGTCATGGGAAAGCTCCTGAAG GTGTTCTGTGCTGGAATGCACTCTGACCACCCCAAGGAGTACATGACACTGGTTCACGGC GACTCTGAGAATTTCTCTGAGGTTTATGGGCACAGGTTGCACAACCCAACCGAATGTCCC TACAACGGAAGCCGGCGTGATGACTGTCAGTGTCGGAAGGACTACACGGCTGCTGGGTTT TCCAGCTTCCAGAAGATCAGAATAGACCTGACCACCATGCAGATCATAACCACCGACTTA CAGTTTGCCCGAACAAGCGAAGGACATCCTGTACCTTTTGCCACCGCTGGGGACTGCTAC AGCGCTGCCAAGTGCCCACAGGGTCGTTTCAGCATCAACCTTTATGGAACTGGCCTGTCT CTAGCTGAATCTGCCAGATGGATCTCTCAAGGGAATTATGCTGTCTCTGACATCAAGAAG TCCCCGGATGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 255-436, - strand, RNAz p=0.956614 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 255-436, - strand, RNAz p=0.956614 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 255-436, gnl|bosTau2|chr22 (27881472-27881291) | |
| 255-436, gnl|Hg17|chr3 (64529252-64529071) | |
| 255-436, gnl|Mm7|chr6 (92911657-92911476) | |
| 596-792, gnl|bosTau2|chr22 (27861193-27860997) | |
| 596-792, gnl|Hg17|chr3 (64507670-64507474) | |
| 596-792, gnl|Mm7|chr6 (92886317-92886121) | |
| 793-931, gnl|bosTau2|chr22 (27859421-27859283) | |
| 793-931, gnl|Hg17|chr3 (64502686-64502548) | |
| 793-931, gnl|Mm7|chr6 (92885263-92885125) | |
| 1114-1247, gnl|bosTau2|chr22 (27858687-27858554) | |
| 1114-1247, gnl|canFam2|chr20 (29725574-29725397) | |
| 1114-1247, gnl|dasNov1|scaffold_154 (146099-146273) | |
| 1114-1247, gnl|echTel1|scaffold_317999 (159105-158944) | |
| 1114-1247, gnl|fr1|chrUn (91048802-91048657) | |
| 1114-1247, gnl|galGal2|chr12 (13731063-13731240) | |
| 1114-1247, gnl|hg17|chr3 (64501790-64501966) | |
| 1114-1247, gnl|Hg17|chr3 (64501946-64501813) | |
| 1114-1247, gnl|loxAfr1|scaffold_23656 (30003-30179) | |
| 1114-1247, gnl|mm7|chr6 (92884044-92884221) | |
| 1114-1247, gnl|Mm7|chr6 (92884201-92884068) | |
| 1114-1247, gnl|monDom2|scaffold_5 (10778284-10778449) | |
| 1114-1247, gnl|oryCun1|scaffold_214786 (250423-250599) | |
| 1114-1247, gnl|panTro1|chrUn_random (23788116-23787940) | |
| 1114-1247, gnl|rheMac2|chr2 (71863907-71863731) | |
| 1114-1247, gnl|rn3|chr4 (127294869-127295046) | |
| 1114-1247, gnl|tetNig1|chr11 (1670462-1670331) | |
| 1114-1247, gnl|xenTro1|scaffold_526 (893500-893331) | |
| 1339-1447, gnl|bosTau2|chr22 (27851677-27851569) | |
| 1339-1447, gnl|canFam2|chr20 (29732620-29732545) | |
| 1339-1447, gnl|dasNov1|scaffold_154 (137822-137896) | |
| 1339-1447, gnl|echTel1|scaffold_317999 (167776-167701) | |
| 1339-1447, gnl|fr1|chrUn (91049588-91049513) | |
| 1339-1447, gnl|galGal2|chr12 (13728576-13728650) | |
| 1339-1447, gnl|hg17|chr3 (64493877-64493952) | |
| 1339-1447, gnl|Hg17|chr3 (64493989-64493881) | |
| 1339-1447, gnl|loxAfr1|scaffold_32932 (37230-37305) | |
| 1339-1447, gnl|mm7|chr6 (92874983-92875058) | |
| 1339-1447, gnl|Mm7|chr6 (92875095-92874987) | |
| 1339-1447, gnl|monDom2|scaffold_5 (10770387-10770461) | |
| 1339-1447, gnl|panTro1|chrUn_random (23795951-23795876) | |
| 1339-1447, gnl|rheMac2|chr2 (71873000-71872925) | |
| 1339-1447, gnl|rn3|chr4 (127286608-127286683) | |
| 1339-1447, gnl|tetNig1|chr11 (1671224-1671149) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 255-436, gnl|bosTau2|chr22 (27881472-27881291) | |
| 255-436, gnl|Hg17|chr3 (64529252-64529071) | |
| 255-436, gnl|Mm7|chr6 (92911657-92911476) | |
| 596-792, gnl|bosTau2|chr22 (27861193-27860997) | |
| 596-792, gnl|Hg17|chr3 (64507670-64507474) | |
| 596-792, gnl|Mm7|chr6 (92886317-92886121) | |
| 793-931, gnl|bosTau2|chr22 (27859421-27859283) | |
| 793-931, gnl|Hg17|chr3 (64502686-64502548) | |
| 793-931, gnl|Mm7|chr6 (92885263-92885125) | |
| 1114-1247, gnl|bosTau2|chr22 (27858687-27858554) | |
| 1114-1247, gnl|canFam2|chr20 (29725574-29725397) | |
| 1114-1247, gnl|dasNov1|scaffold_154 (146099-146273) | |
| 1114-1247, gnl|echTel1|scaffold_317999 (159105-158944) | |
| 1114-1247, gnl|fr1|chrUn (91048802-91048657) | |
| 1114-1247, gnl|galGal2|chr12 (13731063-13731240) | |
| 1114-1247, gnl|hg17|chr3 (64501790-64501966) | |
| 1114-1247, gnl|Hg17|chr3 (64501946-64501813) | |
| 1114-1247, gnl|loxAfr1|scaffold_23656 (30003-30179) | |
| 1114-1247, gnl|mm7|chr6 (92884044-92884221) | |
| 1114-1247, gnl|Mm7|chr6 (92884201-92884068) | |
| 1114-1247, gnl|monDom2|scaffold_5 (10778284-10778449) | |
| 1114-1247, gnl|oryCun1|scaffold_214786 (250423-250599) | |
| 1114-1247, gnl|panTro1|chrUn_random (23788116-23787940) | |
| 1114-1247, gnl|rheMac2|chr2 (71863907-71863731) | |
| 1114-1247, gnl|rn3|chr4 (127294869-127295046) | |
| 1114-1247, gnl|tetNig1|chr11 (1670462-1670331) | |
| 1114-1247, gnl|xenTro1|scaffold_526 (893500-893331) | |
| 1339-1447, gnl|bosTau2|chr22 (27851677-27851569) | |
| 1339-1447, gnl|canFam2|chr20 (29732620-29732545) | |
| 1339-1447, gnl|dasNov1|scaffold_154 (137822-137896) | |
| 1339-1447, gnl|echTel1|scaffold_317999 (167776-167701) | |
| 1339-1447, gnl|fr1|chrUn (91049588-91049513) | |
| 1339-1447, gnl|galGal2|chr12 (13728576-13728650) | |
| 1339-1447, gnl|hg17|chr3 (64493877-64493952) | |
| 1339-1447, gnl|Hg17|chr3 (64493989-64493881) | |
| 1339-1447, gnl|loxAfr1|scaffold_32932 (37230-37305) | |
| 1339-1447, gnl|mm7|chr6 (92874983-92875058) | |
| 1339-1447, gnl|Mm7|chr6 (92875095-92874987) | |
| 1339-1447, gnl|monDom2|scaffold_5 (10770387-10770461) | |
| 1339-1447, gnl|panTro1|chrUn_random (23795951-23795876) | |
| 1339-1447, gnl|rheMac2|chr2 (71873000-71872925) | |
| 1339-1447, gnl|rn3|chr4 (127286608-127286683) | |
| 1339-1447, gnl|tetNig1|chr11 (1671224-1671149) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| tbr (0.154178) | |
| pgl (0.118483) |