Non-Coding RNA Search

Ss1.1-Pig4-TMW8053J22.3

Sequence:


               
               TTTCAGAAACACCAAATGCAAAGGATTGATTGATGTTTGTACCAGATACAAAACTGGCGC
GCGGTTTTCTTTTTGTTCAGGGCCATGTTTACTACCCTGAAACGTTGTGTTTTCTGTATT
TCAATTCCAAGATTGAGATGTCTTGTTAAATTGACAATAAATGGTAAACTTCAGTGTTTT
CATAATACAGTAGTCCTGTTTGGTAAAGGCATACCTGAGTTAAGTACACTGTTCTTAACT
GATTCTAATCATGGACTTTTTATGTGTTTTAAACACATTGAGAAAAACCGCTCAAGATCC
TGCTAAGGTCTAAATTTAGCATATTGACAAAAGAATCTGGATTTATACCCTCTTTAAAAC
CATTTTTACCAGTTTTCTTTGGTTTTAATGCTTTCTTAAATAAAACACTGCATGACTTCC
AAGTTGCATATTTGCATAGTAGTTTAATTTGCAAATTATTTTTAATCAAATAGCCTGATA
TTTTGTTTGTTTCTTTCAGGGTGTTTAAATATGTTACTGTAGTAGCAAAACTTTTTCATT
TTAAAAATCTCTACTACTAATTTTAAAGTTGGTTTGTGTTAAGTAAGAGTTAAATCATAC
ACTGCAAGGTGTAGAAAGATTTGTTTTAATAAACCCAATGACATAGATTTGATTACTAAG
TTTGAACTGTTAACTGTTTAACAATTTTAGACTTGTGGCTTTCTTTCTTTGGTTTGTTTG
TTTTTGCTTTTACTTCTATGCTACACTAGTTTGCCATGTAGCAATTGCACTGTGCAATAT
TACAATAAGGACTGGGAAAATTTTTATGGATGTAATGTCTATTACGGTTTGCGATAGTAT
TTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAG
CGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTACTG
TCGATTCACTTTGAATTAAAAAATATATATTGCAGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAGAAACACCAAATGCAAAGGATTGATTGATGTTTGTACCAGATACAAAACTGGCGC
GCGGTTTTCTTTTTGTTCAGGGCCATGTTTACTACCCTGAAACGTTGTGTTTTCTGTATT
TCAATTCCAAGATTGAGATGTCTTGTTAAATTGACAATAAATGGTAAACTTCAGTGTTTT
CATAATACAGTAGTCCTGTTTGGTAAAGGCATACCTGAGTTAAGTACACTGTTCTTAACT
GATTCTAATCATGGACTTTTTATGTGTTTTAAACACATTGAGAAAAACCGCTCAAGATCC
TGCTAAGGTCTAAATTTAGCATATTGACAAAAGAATCTGGATTTATACCCTCTTTAAAAC
CATTTTTACCAGTTTTCTTTGGTTTTAATGCTTTCTTAAATAAAACACTGCATGACTTCC
AAGTTGCATATTTGCATAGTAGTTTAATTTGCAAATTATTTTTAATCAAATAGCCTGATA
TTTTGTTTGTTTCTTTCAGGGTGTTTAAATATGTTACTGTAGTAGCAAAACTTTTTCATT
TTAAAAATCTCTACTACTAATTTTAAAGTTGGTTTGTGTTAAGTAAGAGTTAAATCATAC
ACTGCAAGGTGTAGAAAGATTTGTTTTAATAAACCCAATGACATAGATTTGATTACTAAG
TTTGAACTGTTAACTGTTTAACAATTTTAGACTTGTGGCTTTCTTTCTTTGGTTTGTTTG
TTTTTGCTTTTACTTCTATGCTACACTAGTTTGCCATGTAGCAATTGCACTGTGCAATAT
TACAATAAGGACTGGGAAAATTTTTATGGATGTAATGTCTATTACGGTTTGCGATAGTAT
TTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAG
CGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTACTG
TCGATTCACTTTGAATTAAAAAATATATATTGCAGCAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-196, - strand, RNAz p=0.990673
               

               
               433-540, - strand, RNAz p=0.832712
               

               
               661-780, - strand, RNAz p=0.886547
               

               
               861-980, + strand, RNAz p=0.648085

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-196, - strand, RNAz p=0.990673
               

               
               433-540, - strand, RNAz p=0.832712
               

               
               661-780, - strand, RNAz p=0.886547
               

               
               861-980, + strand, RNAz p=0.648085

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-999, gnl|bosTau2|chr15 (38273541-38272564)
               

               
               1-999, gnl|Hg17|chr11 (33334158-33335145)
               

               
               1-999, gnl|Mm7|chr2 (104278207-104277268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-999, gnl|bosTau2|chr15 (38273541-38272564)
               

               
               1-999, gnl|Hg17|chr11 (33334158-33335145)
               

               
               1-999, gnl|Mm7|chr2 (104278207-104277268)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ret (0.7724)
               

               
               kid (0.648677)
               

               
               tra (0.492368)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               kid (0.648677)
               

               
               tra (0.492368)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)

	1-196, - strand, RNAz p=0.990673
	433-540, - strand, RNAz p=0.832712
	661-780, - strand, RNAz p=0.886547
	861-980, + strand, RNAz p=0.648085

	1-999, gnl\|bosTau2\|chr15 (38273541-38272564)
	1-999, gnl\|Hg17\|chr11 (33334158-33335145)
	1-999, gnl\|Mm7\|chr2 (104278207-104277268)

	ret (0.7724)
	kid (0.648677)
	tra (0.492368)
	fco (0.314416)
	isp (0.300752)
	mgp (0.230681)
	sin (0.174948)
	eye (0.170503)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)