Non-Coding RNA Search

Ss1.1-Pig4-TMW8053K10.3

Sequence:


               
               TCACCGAGGCCTCGAAAAAGCACTCGGGACTTCTGCAGTCTGCCCAGGAGGAGCTGACCA
GGAAGGACGCCCTCATCCAGGAGCTACAGCACGAGCTAAACCAAAAGAAAGAGGAAGTAG
AGCAGAAGAAGAATGAATATAATTTCAAAATGAGGCAACTGGAACATGTGATGGATTCTG
CTGCCAAGTATCCCCAGAGCCCTAAAACACCACCACATTATCAAACACATTTGGCAAAAC
TCCTGGAATCGAAAGAACAGGAGATAGAGGACGGGAGGGCCTCCAAGATTTCTCTGCAGC
ACCTTGTAACAAAGCTAAATGAAGACAGAGAAGTCAAAAATGCTGAAATCCTCAGAATAA
AGGAGCAGTTGTATGAAATGGAAAACTTACGCCTGGAAGCTGAGCAGTTAAGAGAGAAAA
ACTGGCTCCTGCAAGGTCAGCTGGATGATATTAAAAGACAAAAGGACAGCAGTGAACAGA
ATCATTCGGACAGTCAGCTGCTGAAGAATGAACAAGAAGAAATGATCAAAGAAAGACTTG
CTAAAAATAAATTGGTCGAAGAAATGATGAAAATGAAAGCAGACCTAGAAGAGCTCCAGA
GTACGCTTCAGAACAAAGAAACCGACTACCTTAAAATGACTGAGGAAATCGAACGAGTCA
GAACTTTGGAGTCTAAAGCATTCCAGGAAAAGGAACAACTGAGATCCAAGCTGGAGGAAT
TATATGAAGAAAAGGAGAGAACATGCCAGGAGATGGAAATGTTACGGAAGCAGGTGGAGT
GTCTTGCTGAGGAAAATGGAAAGTTGGTAGGTCACCAAAACCTGCACCAGAAGATCCAGT
ATGTGGTGCGGCTGAAGAAGGAAAACGTCAGGCTTGCTGAGGAGTCAGAGAAGTTGCGTG
CTGAAAATGTATTTTTAAAAGAAAAGCAAAAGAGTGAATTGTAAGGATCCTGATCAACTA
CCTACTTTGGACATTTTTTTCCTCTTATAAAAGTAAGACCTACCTTTGTCCACTTAGTAG
TACTGAATTAAGAACCATAGCTATTAAACTGTGTATATGGTGGGGAGGGGCTACCCCTCA
AGTTTCTGACGGACACTCCACATCCTACACACCTGTGGCAGCTGGCAATCTGCTGTTAGA
GGTTACCACCCCATTTCAAAGCTTTAAATCAACTGTAAATACCAGGAAAACCTTCTGCCT
TTTAAAAATAAAAGCCTGTAGCTGAGGTTTTACAGTATGTCGCTAGATCATTTTTTGCTT
CGATACTGCCATAATCGTCTTTAAATTGTACATCAGAAGCTCCAACAATATGCAGTGCTT
CTAAAACTTGCCGAAAGGTTAGTGACTGCTCAGTGTGTATGAATAGCAAACTTGTTAATA
TAGACTATTTTTGTATTCCTACTTAAAGTGTTTTCATGAGCCCATTTTATGACTGTAAAT
GTGACTATTTTTCAAACTGTAATAAAATCTTTTATTTTTGAAGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCGAGGCCTCGAAAAAGCACTCGGGACTTCTGCAGTCTGCCCAGGAGGAGCTGACCA
GGAAGGACGCCCTCATCCAGGAGCTACAGCACGAGCTAAACCAAAAGAAAGAGGAAGTAG
AGCAGAAGAAGAATGAATATAATTTCAAAATGAGGCAACTGGAACATGTGATGGATTCTG
CTGCCAAGTATCCCCAGAGCCCTAAAACACCACCACATTATCAAACACATTTGGCAAAAC
TCCTGGAATCGAAAGAACAGGAGATAGAGGACGGGAGGGCCTCCAAGATTTCTCTGCAGC
ACCTTGTAACAAAGCTAAATGAAGACAGAGAAGTCAAAAATGCTGAAATCCTCAGAATAA
AGGAGCAGTTGTATGAAATGGAAAACTTACGCCTGGAAGCTGAGCAGTTAAGAGAGAAAA
ACTGGCTCCTGCAAGGTCAGCTGGATGATATTAAAAGACAAAAGGACAGCAGTGAACAGA
ATCATTCGGACAGTCAGCTGCTGAAGAATGAACAAGAAGAAATGATCAAAGAAAGACTTG
CTAAAAATAAATTGGTCGAAGAAATGATGAAAATGAAAGCAGACCTAGAAGAGCTCCAGA
GTACGCTTCAGAACAAAGAAACCGACTACCTTAAAATGACTGAGGAAATCGAACGAGTCA
GAACTTTGGAGTCTAAAGCATTCCAGGAAAAGGAACAACTGAGATCCAAGCTGGAGGAAT
TATATGAAGAAAAGGAGAGAACATGCCAGGAGATGGAAATGTTACGGAAGCAGGTGGAGT
GTCTTGCTGAGGAAAATGGAAAGTTGGTAGGTCACCAAAACCTGCACCAGAAGATCCAGT
ATGTGGTGCGGCTGAAGAAGGAAAACGTCAGGCTTGCTGAGGAGTCAGAGAAGTTGCGTG
CTGAAAATGTATTTTTAAAAGAAAAGCAAAAGAGTGAATTGTAAGGATCCTGATCAACTA
CCTACTTTGGACATTTTTTTCCTCTTATAAAAGTAAGACCTACCTTTGTCCACTTAGTAG
TACTGAATTAAGAACCATAGCTATTAAACTGTGTATATGGTGGGGAGGGGCTACCCCTCA
AGTTTCTGACGGACACTCCACATCCTACACACCTGTGGCAGCTGGCAATCTGCTGTTAGA
GGTTACCACCCCATTTCAAAGCTTTAAATCAACTGTAAATACCAGGAAAACCTTCTGCCT
TTTAAAAATAAAAGCCTGTAGCTGAGGTTTTACAGTATGTCGCTAGATCATTTTTTGCTT
CGATACTGCCATAATCGTCTTTAAATTGTACATCAGAAGCTCCAACAATATGCAGTGCTT
CTAAAACTTGCCGAAAGGTTAGTGACTGCTCAGTGTGTATGAATAGCAAACTTGTTAATA
TAGACTATTTTTGTATTCCTACTTAAAGTGTTTTCATGAGCCCATTTTATGACTGTAAAT
GTGACTATTTTTCAAACTGTAATAAAATCTTTTATTTTTGAAGCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61888146|ref|XP_608266.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888146|ref|XP_608266.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-363, - strand, RNAz p=0.835617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-363, - strand, RNAz p=0.835617

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               196-363, gnl|bosTau2|chr22 (12319693-12319526)
               

               
               196-363, gnl|Hg17|chr3 (44857568-44857735)
               

               
               196-363, gnl|Mm7|chr9 (122715156-122715323)
               


               
               584-750, gnl|bosTau2|chr22 (12312767-12312601)
               

               
               584-750, gnl|Hg17|chr3 (44868283-44868449)
               

               
               584-750, gnl|Mm7|chr9 (122722643-122722809)
               


               
               1351-1474, gnl|bosTau2|chr20 (25470193-25470312)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-363, gnl|bosTau2|chr22 (12319693-12319526)
               

               
               196-363, gnl|Hg17|chr3 (44857568-44857735)
               

               
               196-363, gnl|Mm7|chr9 (122715156-122715323)
               


               
               584-750, gnl|bosTau2|chr22 (12312767-12312601)
               

               
               584-750, gnl|Hg17|chr3 (44868283-44868449)
               

               
               584-750, gnl|Mm7|chr9 (122722643-122722809)
               


               
               1351-1474, gnl|bosTau2|chr20 (25470193-25470312)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.87822)
               

               
               tes (0.831255)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.831255)
               

               
               med (0.116252)

	196-363, gnl\|bosTau2\|chr22 (12319693-12319526)
	196-363, gnl\|Hg17\|chr3 (44857568-44857735)
	196-363, gnl\|Mm7\|chr9 (122715156-122715323)

	584-750, gnl\|bosTau2\|chr22 (12312767-12312601)
	584-750, gnl\|Hg17\|chr3 (44868283-44868449)
	584-750, gnl\|Mm7\|chr9 (122722643-122722809)

	1351-1474, gnl\|bosTau2\|chr20 (25470193-25470312)