Non-Coding RNA Search

Ss1.1-Pig4-TMW8053K16.3

Sequence:


               
               AAGGGCCTCTTTCCAGAGAACTTCACCCGGCGCCTGGATTAGGGCTGAAAGCATTGTAGA
AAGAGCCTGATCACTGGGTTTTTAAACCTTTATGAAAACCTGAAGAGTTCACTTTTGCTA
TTACGCTCTTAACGATTTACAGAGACTGATGCCAGACAAAGCTGGGAAGGATATATCCGT
GGAGCATGTGTGCAGACAAATGTAAGAGGGAAAAAAAAAAAAGGAAATTAAGGAAAAGGT
CTTCATTGGTTCCCACGTTATTGCGAACAGATTTTGTTTGTGCTTTGTTTGAGCTGTGGA
AACTCGTGTACTTGACCCCCCACCAGTTCTAAAGTAGCTTCCTCCAGACCTGAACCTTAA
TTTCTCTCCACCAAGTGTATTGAGTGGCTGCCCTGCAGAAGACGTGATGTGTTATCCTGT
AATACGAGATTATCTTGTTCCCCTGCGCAGGTGTGAGCACGTGCTCTCTCTCCCTTTCAC
GTTTACTGTGTTTAAAACGAATCCGCTGAAAAAGTTTTCAATGTTCTTTTCCAACACACC
TCTCCTTCTCTATATATGGACACACAGTCACACAAAGCTAGTTCCCATCCCTCCTGAATC
TATGTGTATGCACAAGGCTACATATACATAGTTGCGCTCTCTCCTTTCCATTGTAGCTTT
CAGCCTCTCCAGTGTCATTGATACATGCATTGCTCTTATTGTCTGGCATTATTACAGTAG
CAGTTTTGCCTCTGGGCAAAACCTGCCATCCCATTGCCAAAAGAGTCGACAGTATCTGTG
TTCAGAATGTGCATTTTTCAGGATGCGATTAGTCATCGCATGTCCGAGCTGCTGCCCCTT
TGGAGAAAGCAGTCTGATGGTTAGGGTGTCCGGCTGCTGTGGCCGGAGGTAGGTGAGCTG
GAATCAGCAGCTAAATTGTCTTAATTTCTGCCTTTCTGAGGTTGGCTAGATGATGGGGCA
TTTAAATCCATCCCCAAATAACGTTATTTCCAAAAGCTCCTATGTATTTCCACCTCTTTC
TATTTATGCAGCTCATCTTCACAGATTGTCCAAAAATAAGATATAGTGACATATGCTGTA
TCCACCAGTCATCTGTAATGATTATGTTTTCAGTGCTGTGTCATTCCAAATAAACCTTTG
GTAATCTCCAGCAATGACAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGCCTCTTTCCAGAGAACTTCACCCGGCGCCTGGATTAGGGCTGAAAGCATTGTAGA
AAGAGCCTGATCACTGGGTTTTTAAACCTTTATGAAAACCTGAAGAGTTCACTTTTGCTA
TTACGCTCTTAACGATTTACAGAGACTGATGCCAGACAAAGCTGGGAAGGATATATCCGT
GGAGCATGTGTGCAGACAAATGTAAGAGGGAAAAAAAAAAAAGGAAATTAAGGAAAAGGT
CTTCATTGGTTCCCACGTTATTGCGAACAGATTTTGTTTGTGCTTTGTTTGAGCTGTGGA
AACTCGTGTACTTGACCCCCCACCAGTTCTAAAGTAGCTTCCTCCAGACCTGAACCTTAA
TTTCTCTCCACCAAGTGTATTGAGTGGCTGCCCTGCAGAAGACGTGATGTGTTATCCTGT
AATACGAGATTATCTTGTTCCCCTGCGCAGGTGTGAGCACGTGCTCTCTCTCCCTTTCAC
GTTTACTGTGTTTAAAACGAATCCGCTGAAAAAGTTTTCAATGTTCTTTTCCAACACACC
TCTCCTTCTCTATATATGGACACACAGTCACACAAAGCTAGTTCCCATCCCTCCTGAATC
TATGTGTATGCACAAGGCTACATATACATAGTTGCGCTCTCTCCTTTCCATTGTAGCTTT
CAGCCTCTCCAGTGTCATTGATACATGCATTGCTCTTATTGTCTGGCATTATTACAGTAG
CAGTTTTGCCTCTGGGCAAAACCTGCCATCCCATTGCCAAAAGAGTCGACAGTATCTGTG
TTCAGAATGTGCATTTTTCAGGATGCGATTAGTCATCGCATGTCCGAGCTGCTGCCCCTT
TGGAGAAAGCAGTCTGATGGTTAGGGTGTCCGGCTGCTGTGGCCGGAGGTAGGTGAGCTG
GAATCAGCAGCTAAATTGTCTTAATTTCTGCCTTTCTGAGGTTGGCTAGATGATGGGGCA
TTTAAATCCATCCCCAAATAACGTTATTTCCAAAAGCTCCTATGTATTTCCACCTCTTTC
TATTTATGCAGCTCATCTTCACAGATTGTCCAAAAATAAGATATAGTGACATATGCTGTA
TCCACCAGTCATCTGTAATGATTATGTTTTCAGTGCTGTGTCATTCCAAATAAACCTTTG
GTAATCTCCAGCAATGACAGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               665-781, + strand, RNAz p=0.730453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-781, + strand, RNAz p=0.730453

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139316, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139316, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1158, gnl|bosTau2|chr4 (46800137-46798989)
               

               
               1-1158, gnl|Hg17|chr7 (38197700-38196550)
               

               
               1-1158, gnl|Mm7|chr13 (18517043-18518161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1158, gnl|bosTau2|chr4 (46800137-46798989)
               

               
               1-1158, gnl|Hg17|chr7 (38197700-38196550)
               

               
               1-1158, gnl|Mm7|chr13 (18517043-18518161)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

	1-1158, gnl\|bosTau2\|chr4 (46800137-46798989)
	1-1158, gnl\|Hg17\|chr7 (38197700-38196550)
	1-1158, gnl\|Mm7\|chr13 (18517043-18518161)

	fcc (0.39557)
	fce (0.271592)
	cbe (0.239234)
	ebs (0.236602)
	tes (0.207814)
	fhi (0.169578)
	fco (0.157208)
	pla (0.133672)
	ret (0.128733)