Non-Coding RNA Search

Ss1.1-Pig4-TMW8053K17.3

Sequence:


               
               AGCAAAGGATGATCCAGGGGTTCTGATACACAGCTGTAATTTTGACCATGGGCTTTGTGG
ATGGATCCGGGAAAAAGACAGTGACTTGCACTGGGAACCAGTGAGGGATCCAGCAGGTGG
ACAGTACCTGACAGTCTCGGCAGCCAAAGGCCCGGCGGGACGGGCCGCTCGCCTGCTGCT
CCCTCTCGGCCACCTCCTGCACTCAGGGGACCTGTGCCTGTCGTTCAGGCACAAGGTGAC
GGGGCTGCACTCCGGCACGCTCCAGGTGTTTGTGAGAAAACACGGTGCCCACGGAGCAGC
CCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACGCACATCACCTTGCGAGGGGC
TGACGTCAAGAGCGTCATCTTCAAAGGTGAAAAAAGGCGTGGTCACACTGGGGAGATTGC
ATTGGATGATGTGAGCTTGAGAAAAGGCCACTGCACTGAAGAACGCGAGCAACTCCAGAA
CTAGCAATGAACCCCCGTGTTGCTCCCTTTTCTTTTTCCAATATTCACTTCCTGTCCTCT
CCTCCCCCTTATCAGGCCTAGAGGAAGAGTGGGTCAGGAGAAAGTCTGGTGGGTGACCCA
CATCTTGCTGGCCTGCTTTTGTGCAATCCCAATGAACAGTGACACCCTCCTTGAAATACA
GGGGGGCATCTCTAGACGCATCCAAAGCCATCTTTGGGTGTTACCTTCCTTCCTGAATCT
CTTTGAAGAAAGCCTTTGGCATGGGTGACCTATACTATCCTTCATCCTGGTTACAGGGTG
TTCCTTGTAGCTAATTATGGGAGAAGTTTTCAAAAGAAATCTGTGCAAATGGCCATTCTG
TTATTTGTTCAGTGTTGTACCATGAGTAGTATTGACTTTGCCTAAAATGCGTTGTACAAT
GTGCTTGTGAAATTGGTTTCTCCTCTCCACTTTGTTAGTTCTGGTCTGACCTGAACACTG
ACTTTTACTGCCTTCACTTAATAGAAGAAGGGTGTGGAACACGTGGAGATGCCTTTGTTC
TTGTTACCTGTATTTTTCTCTTAAAGATAGTTATGTAGAGTGGGCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAAGGATGATCCAGGGGTTCTGATACACAGCTGTAATTTTGACCATGGGCTTTGTGG
ATGGATCCGGGAAAAAGACAGTGACTTGCACTGGGAACCAGTGAGGGATCCAGCAGGTGG
ACAGTACCTGACAGTCTCGGCAGCCAAAGGCCCGGCGGGACGGGCCGCTCGCCTGCTGCT
CCCTCTCGGCCACCTCCTGCACTCAGGGGACCTGTGCCTGTCGTTCAGGCACAAGGTGAC
GGGGCTGCACTCCGGCACGCTCCAGGTGTTTGTGAGAAAACACGGTGCCCACGGAGCAGC
CCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACGCACATCACCTTGCGAGGGGC
TGACGTCAAGAGCGTCATCTTCAAAGGTGAAAAAAGGCGTGGTCACACTGGGGAGATTGC
ATTGGATGATGTGAGCTTGAGAAAAGGCCACTGCACTGAAGAACGCGAGCAACTCCAGAA
CTAGCAATGAACCCCCGTGTTGCTCCCTTTTCTTTTTCCAATATTCACTTCCTGTCCTCT
CCTCCCCCTTATCAGGCCTAGAGGAAGAGTGGGTCAGGAGAAAGTCTGGTGGGTGACCCA
CATCTTGCTGGCCTGCTTTTGTGCAATCCCAATGAACAGTGACACCCTCCTTGAAATACA
GGGGGGCATCTCTAGACGCATCCAAAGCCATCTTTGGGTGTTACCTTCCTTCCTGAATCT
CTTTGAAGAAAGCCTTTGGCATGGGTGACCTATACTATCCTTCATCCTGGTTACAGGGTG
TTCCTTGTAGCTAATTATGGGAGAAGTTTTCAAAAGAAATCTGTGCAAATGGCCATTCTG
TTATTTGTTCAGTGTTGTACCATGAGTAGTATTGACTTTGCCTAAAATGCGTTGTACAAT
GTGCTTGTGAAATTGGTTTCTCCTCTCCACTTTGTTAGTTCTGGTCTGACCTGAACACTG
ACTTTTACTGCCTTCACTTAATAGAAGAAGGGTGTGGAACACGTGGAGATGCCTTTGTTC
TTGTTACCTGTATTTTTCTCTTAAAGATAGTTATGTAGAGTGGGCACG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-307, + strand, RNAz p=0.987836

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, + strand, RNAz p=0.987836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-375, gnl|bosTau2|chr29 (40438051-40438315)
               

               
               110-375, gnl|Hg17|chr4 (107245941-107246207)
               

               
               110-375, gnl|Mm7|chr3 (132682948-132682683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-375, gnl|bosTau2|chr29 (40438051-40438315)
               

               
               110-375, gnl|Hg17|chr4 (107245941-107246207)
               

               
               110-375, gnl|Mm7|chr3 (132682948-132682683)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               sme (0.305437)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               eep (0.122564)

	110-375, gnl\|bosTau2\|chr29 (40438051-40438315)
	110-375, gnl\|Hg17\|chr4 (107245941-107246207)
	110-375, gnl\|Mm7\|chr3 (132682948-132682683)