Non-Coding RNA Search

Ss1.1-Pig4-TMW8053K24.3.5

Sequence:


               
               AAAGTTCCAACCTCATTCAACACCAGAAGATTCACAGCGGGGCGAGGCCTTATAAATGCA
GTGAATGTGGAAAATCTTTCAGCTACAAATGCAAACTTGTGCAGCACCTGCGAATTCACA
CTGGAGAACGGCCTTACGAGTGTGGCGAATGTGGGAAATCCTTTAGCCACAGCTCTACTC
TCAATCAACACCAGAGAATTCACACTGGAGCAAGACCTTATAAGTGTGATGAGTGTGACA
AATCCTTTAGCCAAAAGTCTAATCTCATTCAGCACCGGAGAGTCCACACAGGAGAAAAGC
CTTATGAGTGTGGGGAATGCGGGAAATCCTTTAGTCAAAGCTCCCACATCATCCAACACA
GAAAACTTCACACCAGATAACCTCATGAATGCAATGACTGTGAGAAAACCAGCTGCAGCC
AGTGTTCTTTATCTCAACATGAAAAGTTAATAGCAAATTTGGGAAAACCTTCATGTAAAG
GTCTTTCTGTCCATCTGTGGGGAGCATGGGTTTTTGTTGCTTGGCATAATAGAACTAGAG
AGGCTTTGTGCTTGATGGTGGAGCCTCATATATCAGTCATCCACAGTGGGAACATTGTAG
GTTTGTGGTATTCTTTTAGGAGATTTTTTACATATATGCTACTGCTGGCTCCCTTGCCTG
AATTATGTCCCATCCAGTTTCTGTGGCAGAAGCCTCACCTCCACCTCCTAGCCAGTCCCA
GGTTCCAACAGTATGGCCGTCAGAGAAGGCAGAAGTCTCTTCCCTACAGAGTAGGAATAA
TTGTTTTTTGTTTTTTGTCTTTTTCTAGGGCCGCTCCCACAGCGTACGGAGGCTCCCAGG
CTAGGGGTCGAATCAGAGCTATTGCTGCTAGCCTACGCCAGAGCAACATGGGATCCAAGC
CACATCTGTGACCTCCTACGAGCCACGATGGGAACTCCTCCAGAGCAGAAATAATTTTCA
GGGGTGCCTCATTCCCACTTCTCTAATTAGGTCTTGATCCTGACCCAGTTTTAGCAAAGA
TCACTCTGTGTGTGTAATGTTAGCACCAAAAGATTTGCCCTTTTCCAGTTGTGGTCTAAC
TTGCATTGCTGACAATCATGTGCCTTCTATCTAGAGTTGTATTTTCTGGTGTCACCGCTT
GTAACGCTACAGGGGTGAGGCTGAAATCTTAATTCATACAGAAACACAGGATGTGATTAA
CTTGCACTGGAAGGCACCATGGCAAGAGAGGATGTACCTCCACATCCCATGTTCCTCCTG
TAGTTGAGGTTTTTGTCAGAGCTCTGTTTTTTCTTGTAGCCTTTGGATTGTCCACCTCAA
GGATACTTGCTGCATTGACAAGAAATGAGAATAGACAGAAGGGAGACCCTGTAATAAGCC
CAGGATATAGCTTTTGTGACCCTACAACTGTTCCTGCCAACTCAGATGAAATATCTTTGC
CAGTACTTCCTTCCCCTAAATACAGGGCTGCCCCTCCCGAGGTTGCTAAACCTGCAGTTG
TGAAAAAAAAGGAGAATCAGATTTCTGTTTGAACAGGTTTTTATATATATATACCTATAA
CAAATTTTATTCTATATTTGATTTAAAATGTATAATACCATTAGTTTTTGGTTTGGTTTG
GTTTTGGCTGCACCTACAGCATCTGGAAGTTCCCGGGCCAGAGATGGATCATTATTAGCC
TGTTGTGCAACAAGGGATTATGATTAGAAACCATAATTATGATTAGAATCCATAAAAGTA
TTTACTTTTTAAAAATTGTGCTTTCCTTCCTGCTACATAATTATTTTGTGATTCATAAAT
GTTACTTATGTAAATACTTCATCCTTATTACAACTGAGTATTATCCTGTGTAGTAGATAT
ACCAAGATTGGTTGATTTGTTTACTCACTTGCCAGCTTGTTTCCAGTTCTTGGCTGTTTA
CAAATAAAGCCTTATGTAAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTTCCAACCTCATTCAACACCAGAAGATTCACAGCGGGGCGAGGCCTTATAAATGCA
GTGAATGTGGAAAATCTTTCAGCTACAAATGCAAACTTGTGCAGCACCTGCGAATTCACA
CTGGAGAACGGCCTTACGAGTGTGGCGAATGTGGGAAATCCTTTAGCCACAGCTCTACTC
TCAATCAACACCAGAGAATTCACACTGGAGCAAGACCTTATAAGTGTGATGAGTGTGACA
AATCCTTTAGCCAAAAGTCTAATCTCATTCAGCACCGGAGAGTCCACACAGGAGAAAAGC
CTTATGAGTGTGGGGAATGCGGGAAATCCTTTAGTCAAAGCTCCCACATCATCCAACACA
GAAAACTTCACACCAGATAACCTCATGAATGCAATGACTGTGAGAAAACCAGCTGCAGCC
AGTGTTCTTTATCTCAACATGAAAAGTTAATAGCAAATTTGGGAAAACCTTCATGTAAAG
GTCTTTCTGTCCATCTGTGGGGAGCATGGGTTTTTGTTGCTTGGCATAATAGAACTAGAG
AGGCTTTGTGCTTGATGGTGGAGCCTCATATATCAGTCATCCACAGTGGGAACATTGTAG
GTTTGTGGTATTCTTTTAGGAGATTTTTTACATATATGCTACTGCTGGCTCCCTTGCCTG
AATTATGTCCCATCCAGTTTCTGTGGCAGAAGCCTCACCTCCACCTCCTAGCCAGTCCCA
GGTTCCAACAGTATGGCCGTCAGAGAAGGCAGAAGTCTCTTCCCTACAGAGTAGGAATAA
TTGTTTTTTGTTTTTTGTCTTTTTCTAGGGCCGCTCCCACAGCGTACGGAGGCTCCCAGG
CTAGGGGTCGAATCAGAGCTATTGCTGCTAGCCTACGCCAGAGCAACATGGGATCCAAGC
CACATCTGTGACCTCCTACGAGCCACGATGGGAACTCCTCCAGAGCAGAAATAATTTTCA
GGGGTGCCTCATTCCCACTTCTCTAATTAGGTCTTGATCCTGACCCAGTTTTAGCAAAGA
TCACTCTGTGTGTGTAATGTTAGCACCAAAAGATTTGCCCTTTTCCAGTTGTGGTCTAAC
TTGCATTGCTGACAATCATGTGCCTTCTATCTAGAGTTGTATTTTCTGGTGTCACCGCTT
GTAACGCTACAGGGGTGAGGCTGAAATCTTAATTCATACAGAAACACAGGATGTGATTAA
CTTGCACTGGAAGGCACCATGGCAAGAGAGGATGTACCTCCACATCCCATGTTCCTCCTG
TAGTTGAGGTTTTTGTCAGAGCTCTGTTTTTTCTTGTAGCCTTTGGATTGTCCACCTCAA
GGATACTTGCTGCATTGACAAGAAATGAGAATAGACAGAAGGGAGACCCTGTAATAAGCC
CAGGATATAGCTTTTGTGACCCTACAACTGTTCCTGCCAACTCAGATGAAATATCTTTGC
CAGTACTTCCTTCCCCTAAATACAGGGCTGCCCCTCCCGAGGTTGCTAAACCTGCAGTTG
TGAAAAAAAAGGAGAATCAGATTTCTGTTTGAACAGGTTTTTATATATATATACCTATAA
CAAATTTTATTCTATATTTGATTTAAAATGTATAATACCATTAGTTTTTGGTTTGGTTTG
GTTTTGGCTGCACCTACAGCATCTGGAAGTTCCCGGGCCAGAGATGGATCATTATTAGCC
TGTTGTGCAACAAGGGATTATGATTAGAAACCATAATTATGATTAGAATCCATAAAAGTA
TTTACTTTTTAAAAATTGTGCTTTCCTTCCTGCTACATAATTATTTTGTGATTCATAAAT
GTTACTTATGTAAATACTTCATCCTTATTACAACTGAGTATTATCCTGTGTAGTAGATAT
ACCAAGATTGGTTGATTTGTTTACTCACTTGCCAGCTTGTTTCCAGTTCTTGGCTGTTTA
CAAATAAAGCCTTATGTAAACACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-159, + strand, RNAz p=0.771337
               

               
               600-730, - strand, RNAz p=0.565839

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.771337
               

               
               600-730, - strand, RNAz p=0.565839

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-730, gnl|bosTau2|chr18 (56494142-56494855)
               


               
               5-452, gnl|bosTau2|chr14 (25795133-25794682)
               

               
               5-452, gnl|Hg17|chr19 (49069525-49069074)
               

               
               5-452, gnl|Mm7|chr7 (26999780-26999329)
               


               
               11-445, gnl|bosTau2|chr10 (8996457-8996020)
               

               
               11-445, gnl|Hg17|chr19 (42818261-42817755)
               

               
               11-445, gnl|Mm7|chr2 (127309888-127309535)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-730, gnl|bosTau2|chr18 (56494142-56494855)
               


               
               5-452, gnl|bosTau2|chr14 (25795133-25794682)
               

               
               5-452, gnl|Hg17|chr19 (49069525-49069074)
               

               
               5-452, gnl|Mm7|chr7 (26999780-26999329)
               


               
               11-445, gnl|bosTau2|chr10 (8996457-8996020)
               

               
               11-445, gnl|Hg17|chr19 (42818261-42817755)
               

               
               11-445, gnl|Mm7|chr2 (127309888-127309535)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	40-159, + strand, RNAz p=0.771337
	600-730, - strand, RNAz p=0.565839

	1-730, gnl\|bosTau2\|chr18 (56494142-56494855)

	5-452, gnl\|bosTau2\|chr14 (25795133-25794682)
	5-452, gnl\|Hg17\|chr19 (49069525-49069074)
	5-452, gnl\|Mm7\|chr7 (26999780-26999329)

	11-445, gnl\|bosTau2\|chr10 (8996457-8996020)
	11-445, gnl\|Hg17\|chr19 (42818261-42817755)
	11-445, gnl\|Mm7\|chr2 (127309888-127309535)

	rec (0.346141)
	sme (0.305437)
	lin (0.291206)
	spl (0.286369)
	cbe (0.239234)
	pan (0.23596)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	tra (0.123092)