Non-Coding RNA Search

Ss1.1-Pig4-TMW8053L04.3

Sequence:


               
               CATTATAAAAGGGCACTTCTGTGGCTCATTACAAAGAAAAAAAATGTTCCGAATCTGTCA
GTCTTGGCCTTGTTTCCAAATCCTGTCTTCCATTTTATTCTGCAATTCCCGACCCCTCTT
ATAAAAAGCTCACCAACTTTTGAAGAAACTGGAATAGGCTGTTATTTCATCAAGGTTTAC
ACATGAAGTGCTTGGTTTTTAATGTATCCTCTACTGTTTTGATTTTCAGAATTTATTAAT
ATTTGAAGATGTGCCTTTTATTGGGTAATGTTAAGTCACGAATGTAGTAATGTTATTTCG
CTCTTGTAATAATGTTACGTGATCATGGATGCAGCATTCTCTAACATGATGTGAAGGGAA
AAGTAGTTTTCTTAAAACTCATGTGGCTCTGATTGCACAGTCCCACTTGCTGTAGACACT
GCTACATCAAAGCAGGGGGCACTTTCTTTAAAGGCTACTTTCAGAACTTGTCTTTGTATT
TTCTCTAAACTATAAATGCAGTTATGTCCATTTGGGGGCCAGGGTACCACGTGTCACGGG
CAGCCTTACATGTGTGTCGTGAGAAGGTTCAAAGACTGTTAAGAAAGAAGAAAGTCTATG
GGAACTCAAAATTTCATTTTTTAATGTAATCCCCAGATCTTCTCCAAGAAATAAATTACT
CTTTTGTATTTTGTAACTTAAAAGCAGCTATTAGTACATTTCTGAGATATAGCAGGAGAC
CAAAACATGTTTGGAAAGAGAATAAATATATGAAGAGAGACTGGTTGTTTTATTTTCAAT
GTACTGAAATATATTAGACTACTATTTATTTTGTGAGTGGATATGATGAAGTAAATATTC
AGGTGTTTAGTGTATGATTAAGAGTGGGATATAGATTTCTTTGGAGTTATTAAATCCATC
CTGTCTTTTACAAAATGGACAAATCAAGTTTAAAGAAACATTTACATAGCATAGCTTGTT
TTCTGGTGCTGTTGACCTGCAAGAGAATCTACTTTTGCATATACAGATAAAAGTTTTGCA
ATTTATGTATTAAAGAAATTGTAGGCATTAAAAATATTTTATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATAAAAGGGCACTTCTGTGGCTCATTACAAAGAAAAAAAATGTTCCGAATCTGTCA
GTCTTGGCCTTGTTTCCAAATCCTGTCTTCCATTTTATTCTGCAATTCCCGACCCCTCTT
ATAAAAAGCTCACCAACTTTTGAAGAAACTGGAATAGGCTGTTATTTCATCAAGGTTTAC
ACATGAAGTGCTTGGTTTTTAATGTATCCTCTACTGTTTTGATTTTCAGAATTTATTAAT
ATTTGAAGATGTGCCTTTTATTGGGTAATGTTAAGTCACGAATGTAGTAATGTTATTTCG
CTCTTGTAATAATGTTACGTGATCATGGATGCAGCATTCTCTAACATGATGTGAAGGGAA
AAGTAGTTTTCTTAAAACTCATGTGGCTCTGATTGCACAGTCCCACTTGCTGTAGACACT
GCTACATCAAAGCAGGGGGCACTTTCTTTAAAGGCTACTTTCAGAACTTGTCTTTGTATT
TTCTCTAAACTATAAATGCAGTTATGTCCATTTGGGGGCCAGGGTACCACGTGTCACGGG
CAGCCTTACATGTGTGTCGTGAGAAGGTTCAAAGACTGTTAAGAAAGAAGAAAGTCTATG
GGAACTCAAAATTTCATTTTTTAATGTAATCCCCAGATCTTCTCCAAGAAATAAATTACT
CTTTTGTATTTTGTAACTTAAAAGCAGCTATTAGTACATTTCTGAGATATAGCAGGAGAC
CAAAACATGTTTGGAAAGAGAATAAATATATGAAGAGAGACTGGTTGTTTTATTTTCAAT
GTACTGAAATATATTAGACTACTATTTATTTTGTGAGTGGATATGATGAAGTAAATATTC
AGGTGTTTAGTGTATGATTAAGAGTGGGATATAGATTTCTTTGGAGTTATTAAATCCATC
CTGTCTTTTACAAAATGGACAAATCAAGTTTAAAGAAACATTTACATAGCATAGCTTGTT
TTCTGGTGCTGTTGACCTGCAAGAGAATCTACTTTTGCATATACAGATAAAAGTTTTGCA
ATTTATGTATTAAAGAAATTGTAGGCATTAAAAATATTTTATTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               673-792, + strand, RNAz p=0.600695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-792, + strand, RNAz p=0.600695

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX641102, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX641102, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1063, gnl|bosTau2|chr29 (18226903-18227945)
               

               
               1-1063, gnl|Hg17|chr11 (18585875-18584528)
               

               
               1-1063, gnl|Mm7|chr7 (43167593-43166581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1063, gnl|bosTau2|chr29 (18226903-18227945)
               

               
               1-1063, gnl|Hg17|chr11 (18585875-18584528)
               

               
               1-1063, gnl|Mm7|chr7 (43167593-43166581)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nms (0.213858)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-1063, gnl\|bosTau2\|chr29 (18226903-18227945)
	1-1063, gnl\|Hg17\|chr11 (18585875-18584528)
	1-1063, gnl\|Mm7\|chr7 (43167593-43166581)

	nms (0.213858)
	lin (0.145603)
	nca (0.136874)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)
	ldo (0.0970026)