Non-Coding RNA Search

Ss1.1-Pig4-TMW8053L04.5

Sequence:


               
               GGGATTAGGAAGTAGGAGAGGTTATCCTACAAGAATCCTTACTCTTCAACAGGTCTAGAA
GCTGTTTTTTGTATATTCCTCTTTATCCATAAAACCTTCTTTTATCCTCGAGTTTGGATG
TTATGGATTACCACCATTAGCCTTCCTTACTGGGATGACCAAGTGACTCAGTCCTTCTAA
GACTTTGACGCATTTTGAATTGAGTTTCAAACTTTAAAAATGCGAGGATTTAATTTTGAA
GTTGGATCCTAAGAAAGGTATCTCCATCACTAGGAATAACCCCCTTCTAATGATCACATA
GCACTGTTAAACACTGGTGGCAGAAAATCCTATTGACTGCCTCTCACCTATTTCAGATAC
TTTCAGTGAAATCCATTCAAGAGTAGCGTGATATTCCAGGTAATAAAACAGGTTTGGAAC
TTTTATTTCTTTGGCTGTCACTTAACGTGCTTTTTTCTCCCCCTTCAAATATTTGCTTGA
ATATATTTTTTTCAATATTCAGACTCTGTGAAATCTGTAATTACAATCAAGTGCTTGTCA
CAGCTGAAAGATTTCTGGTGGCTTAAAGCTCACTAGCACTTTACTCAATGATATTGTGCA
GTTATTTGTACAGAAGGTACCGTTGTGCTAGCTAAAAGTTCCAGAACTTGGTAGAAAGAG
TCATGTTGTGTCCTTGTGTGTCATCACTTCTAGGTGCATTTCCTCTATAATACAGATGTT
GATTTCAGTTTTCTTCAGCGTCAGCATTATAAAAGGGCACTTCTGTTGCTCATTAGAAAG
AAAAAAAAATGTTCCGAATCTGTCAGTCTTGGCCTTGTTTCCAAATCCTGTCTTCCATTT
TATTCTGCAATTCCCGACCCCTCTTATAAAAAGCTCACCAACTTTTGAAGAAACTGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATTAGGAAGTAGGAGAGGTTATCCTACAAGAATCCTTACTCTTCAACAGGTCTAGAA
GCTGTTTTTTGTATATTCCTCTTTATCCATAAAACCTTCTTTTATCCTCGAGTTTGGATG
TTATGGATTACCACCATTAGCCTTCCTTACTGGGATGACCAAGTGACTCAGTCCTTCTAA
GACTTTGACGCATTTTGAATTGAGTTTCAAACTTTAAAAATGCGAGGATTTAATTTTGAA
GTTGGATCCTAAGAAAGGTATCTCCATCACTAGGAATAACCCCCTTCTAATGATCACATA
GCACTGTTAAACACTGGTGGCAGAAAATCCTATTGACTGCCTCTCACCTATTTCAGATAC
TTTCAGTGAAATCCATTCAAGAGTAGCGTGATATTCCAGGTAATAAAACAGGTTTGGAAC
TTTTATTTCTTTGGCTGTCACTTAACGTGCTTTTTTCTCCCCCTTCAAATATTTGCTTGA
ATATATTTTTTTCAATATTCAGACTCTGTGAAATCTGTAATTACAATCAAGTGCTTGTCA
CAGCTGAAAGATTTCTGGTGGCTTAAAGCTCACTAGCACTTTACTCAATGATATTGTGCA
GTTATTTGTACAGAAGGTACCGTTGTGCTAGCTAAAAGTTCCAGAACTTGGTAGAAAGAG
TCATGTTGTGTCCTTGTGTGTCATCACTTCTAGGTGCATTTCCTCTATAATACAGATGTT
GATTTCAGTTTTCTTCAGCGTCAGCATTATAAAAGGGCACTTCTGTTGCTCATTAGAAAG
AAAAAAAAATGTTCCGAATCTGTCAGTCTTGGCCTTGTTTCCAAATCCTGTCTTCCATTT
TATTCTGCAATTCCCGACCCCTCTTATAAAAAGCTCACCAACTTTTGAAGAAACTGGAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               276-900, gnl|bosTau2|chr29 (18226452-18227058)
               

               
               276-900, gnl|Hg17|chr11 (18586465-18585719)
               

               
               276-900, gnl|Mm7|chr7 (43168072-43167456)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-900, gnl|bosTau2|chr29 (18226452-18227058)
               

               
               276-900, gnl|Hg17|chr11 (18586465-18585719)
               

               
               276-900, gnl|Mm7|chr7 (43168072-43167456)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eje (0.0988338)

	276-900, gnl\|bosTau2\|chr29 (18226452-18227058)
	276-900, gnl\|Hg17\|chr11 (18586465-18585719)
	276-900, gnl\|Mm7\|chr7 (43168072-43167456)