Non-Coding RNA Search

Ss1.1-Pig4-TMW8053L06.5

Sequence:


               
               TCTTGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGGCTT
GATGCCATTGTAACCCAGCTTTTAGGACAACTGGAAAACACAGGGCCTCCCCCAGCAGAC
AAGGAAAAGATCACATCTCTTCCAACAGTGACAATAACTCAGGAACAAGTTGATAAGGGT
TTAGAGTGTCCAGTATGCAAAGAGGATTACACAGTTGAGGAGGAAGTCCGACAGTTACCC
TGCAACCACTTCTTTCACAGCAGTTGTATTGTGCCTTGGTTAGAACTGCATGACGCATGT
CCTGTGTGTAGGAAGAGCTTAAGTGGTGAGGACTCTACTCAGCAAACCCAGACCTCTGGG
GCCTCTGCAAGCAACAGATTTAGCAGTGAAAGCCAGCTACATGACCGATGGACTTTCTGA
AGCTAAACACCGCATCTGAGCCAGGGCCATGGTAGAGCTCTTATCACAGCTGTTAATTGT
ATCAAAACAAAAAAATAGTAGGTGGATTTAAGAATCATTTAAGAAACCTCAACCCATAAT
ATTAATTCAATGAGTGTTTTTCTTCTCTAAATTTAAAGTTAGTATCTACAGATGGAATTG
TATCCACAACCAAATGCCTCTTACTCCTGAATTTGGAGTGATAATTTTGTAAGTGTGAAA
CTTAATTATGTGGGTTTCTCCTGCCAGAATAGAATCAGTTCCATAAAGTCTAGCTAGGGT
CCTGCTATCTCTCATGTACGTTGTGATGGATGTTTCCACCTCTTTCTGCAGTCTCCACCC
TACCATTAGTGTATTTTACAGTAAACACAGTGGGACCAGAGCCCTGGAGTCATACTGACA
TATAAAGTCCATCTGTTTTAATTGTATAAAAGCATCTACTCTTGGCCACATTAGCCATGA
TGTGAGATCAGGTTAATTCAGGAATCTAAGACTAATGGTTTTGTTGTTTCTTAAATACTC
AGAGAGAAAATCAAAGAAAAATTATGCTGGGAAGGAGAAAGTGGCTTATCATTGTACTCT
TCGATTTTCTCATTCTTATTTTTAAAGACTACTCCATAAGATGCAACTTCTGCAGAACCA
ACATGACATGTCTTAGGAGTCTTATGTTGGTAGGAATCTGATTCAGGTTCCTTTTTGGGA
ATGAGTTGGACAGCATACATACACAGAAAGACAGATGTTTGAAATCTTTGGTTCTGAGGT
TTTTTAATGATCCCTAACTTATTGTATATCCTGGGCACCTTAAAATAATTTCCCTCACAG
AAACAATTACTTCATTACTGCTTCTACAGCCAATTAATTGTTTTTAGTAATTCATTCATT
GGTCTTCAAGAATTAAGATTTTTTTGTTTCATTTACATTTTCTAAGCCCTTTATCATCTC
TGAACCTTTCTGTTTGCTTGGTTCTGGCTATACTTGGAGTCAAACTAATTATTGTGAATG
TCCCCAAACAACTTGGCCTAGGAGAGGTAGGCCTTCTTTTTTCCAGCCTAAAAAATATAT
GCACATGCTCTTTGGCACATTTAAGTATTTAAAGTTTAATAAATGAAGAAGATTAAGAAA
GTTATTGAAACTTCAGAGTCTTGAAAATAAATGATGGGGACATGTAACCACTGTTGTTGT
ACCAAAAACAGTGACAGAGGGACACCATTTGTGTGGTCATATCAACCCTTCATAGTTTGG
AATGATTAGAACAGGAATGCTATTCTTCGGTGAGGCTGTTTGCTAGGAGTCTTTGCTCAG
TTTTATTGACTGTCAAACACTAGTTTTAGGGGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGGCTT
GATGCCATTGTAACCCAGCTTTTAGGACAACTGGAAAACACAGGGCCTCCCCCAGCAGAC
AAGGAAAAGATCACATCTCTTCCAACAGTGACAATAACTCAGGAACAAGTTGATAAGGGT
TTAGAGTGTCCAGTATGCAAAGAGGATTACACAGTTGAGGAGGAAGTCCGACAGTTACCC
TGCAACCACTTCTTTCACAGCAGTTGTATTGTGCCTTGGTTAGAACTGCATGACGCATGT
CCTGTGTGTAGGAAGAGCTTAAGTGGTGAGGACTCTACTCAGCAAACCCAGACCTCTGGG
GCCTCTGCAAGCAACAGATTTAGCAGTGAAAGCCAGCTACATGACCGATGGACTTTCTGA
AGCTAAACACCGCATCTGAGCCAGGGCCATGGTAGAGCTCTTATCACAGCTGTTAATTGT
ATCAAAACAAAAAAATAGTAGGTGGATTTAAGAATCATTTAAGAAACCTCAACCCATAAT
ATTAATTCAATGAGTGTTTTTCTTCTCTAAATTTAAAGTTAGTATCTACAGATGGAATTG
TATCCACAACCAAATGCCTCTTACTCCTGAATTTGGAGTGATAATTTTGTAAGTGTGAAA
CTTAATTATGTGGGTTTCTCCTGCCAGAATAGAATCAGTTCCATAAAGTCTAGCTAGGGT
CCTGCTATCTCTCATGTACGTTGTGATGGATGTTTCCACCTCTTTCTGCAGTCTCCACCC
TACCATTAGTGTATTTTACAGTAAACACAGTGGGACCAGAGCCCTGGAGTCATACTGACA
TATAAAGTCCATCTGTTTTAATTGTATAAAAGCATCTACTCTTGGCCACATTAGCCATGA
TGTGAGATCAGGTTAATTCAGGAATCTAAGACTAATGGTTTTGTTGTTTCTTAAATACTC
AGAGAGAAAATCAAAGAAAAATTATGCTGGGAAGGAGAAAGTGGCTTATCATTGTACTCT
TCGATTTTCTCATTCTTATTTTTAAAGACTACTCCATAAGATGCAACTTCTGCAGAACCA
ACATGACATGTCTTAGGAGTCTTATGTTGGTAGGAATCTGATTCAGGTTCCTTTTTGGGA
ATGAGTTGGACAGCATACATACACAGAAAGACAGATGTTTGAAATCTTTGGTTCTGAGGT
TTTTTAATGATCCCTAACTTATTGTATATCCTGGGCACCTTAAAATAATTTCCCTCACAG
AAACAATTACTTCATTACTGCTTCTACAGCCAATTAATTGTTTTTAGTAATTCATTCATT
GGTCTTCAAGAATTAAGATTTTTTTGTTTCATTTACATTTTCTAAGCCCTTTATCATCTC
TGAACCTTTCTGTTTGCTTGGTTCTGGCTATACTTGGAGTCAAACTAATTATTGTGAATG
TCCCCAAACAACTTGGCCTAGGAGAGGTAGGCCTTCTTTTTTCCAGCCTAAAAAATATAT
GCACATGCTCTTTGGCACATTTAAGTATTTAAAGTTTAATAAATGAAGAAGATTAAGAAA
GTTATTGAAACTTCAGAGTCTTGAAAATAAATGATGGGGACATGTAACCACTGTTGTTGT
ACCAAAAACAGTGACAGAGGGACACCATTTGTGTGGTCATATCAACCCTTCATAGTTTGG
AATGATTAGAACAGGAATGCTATTCTTCGGTGAGGCTGTTTGCTAGGAGTCTTTGCTCAG
TTTTATTGACTGTCAAACACTAGTTTTAGGGGTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61883503|ref|XP_609960.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883503|ref|XP_609960.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               172-287, gnl|bosTau2|chr3 (15384827-15384712)
               

               
               172-287, gnl|Hg17|chr1 (143176019-143176134)
               

               
               172-287, gnl|Mm7|chr3 (96662342-96662457)
               


               
               662-1732, gnl|bosTau2|chr3 (15383612-15382546)
               

               
               662-1732, gnl|Hg17|chr1 (143177515-143179472)
               

               
               662-1732, gnl|Mm7|chr3 (96664045-96665119)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-287, gnl|bosTau2|chr3 (15384827-15384712)
               

               
               172-287, gnl|Hg17|chr1 (143176019-143176134)
               

               
               172-287, gnl|Mm7|chr3 (96662342-96662457)
               


               
               662-1732, gnl|bosTau2|chr3 (15383612-15382546)
               

               
               662-1732, gnl|Hg17|chr1 (143177515-143179472)
               

               
               662-1732, gnl|Mm7|chr3 (96664045-96665119)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               isp (0.451128)
               

               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	172-287, gnl\|bosTau2\|chr3 (15384827-15384712)
	172-287, gnl\|Hg17\|chr1 (143176019-143176134)
	172-287, gnl\|Mm7\|chr3 (96662342-96662457)

	662-1732, gnl\|bosTau2\|chr3 (15383612-15382546)
	662-1732, gnl\|Hg17\|chr1 (143177515-143179472)
	662-1732, gnl\|Mm7\|chr3 (96664045-96665119)

	isp (0.451128)
	ste (0.405625)
	vin (0.332557)
	fco (0.314416)
	lun (0.300978)
	cte (0.29274)
	liv (0.292569)
	mgp (0.230681)
	aor (0.195274)
	mcp (0.170648)
	cki (0.165235)
	mga (0.160205)
	tbr (0.154178)
	spl (0.143184)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)