Non-Coding RNA Search

Ss1.1-Pig4-TMW8053L12.3

Sequence:


               
               CTCAATTTAGTTGCCCAAATAGAATGTGGTGCCTTATTCACATTGGTGCCTTGTTAAGAC
CAGGCTCAGGATGGGGATTAACAGAAATTCTTACACATCTTGTCTTCTCTTAGTACATAA
AAATATAAAGGCACTTTTTAAAAAATATATTACCTGTATTCTTTTTGAAGGTTGACTGCC
ACATTTTTTTTTTCCCTTTGGCAGTAGTCCTCTGTCATATGTGGGATTTTTTTCCCCCTC
TTATGGTCAGACACTTATTTCTGGATGTGTTTAATGTCATTCCTGATCTTCTCCAGGGTA
CTCTTCAAGACCAGCTCTGACTGAGTTGTTATGGGTGGCAACTACCCCTCCCTTCCAATT
TTGGATTCTATTTTTATGTATCTCTAGATATCACCTTTAATTCATGACTCACAGTATTAT
TAAATGGTGCAAACTTCTGTTTAACCTCAGGTGAGACAGCAGTTGCTAAGGATTAATTTG
CTAAGAGGTCAAGGGAGGACTCCTTGGGAGTTTTGGTCGGTTGTCTTCCCTCCTGCTCTT
TGGCTCCTCTCCAAAATTCATCCGGGACCACGGGCTCCTCAAGGAGCTTGTACTAAAAAG
CTGGAGCCATGGCTCTGAATTGACCAAGCACTGTGGTTTGCACAGTCAGAAGTCTGACAA
AAGCAAACCATTATGACTGCATATCTAATGTTATCAAAATTTCAACGGAGAAGATTAAGA
AAAGCAATTCTGTTTGTGTGGGACATAGACACAGTTGGCCACCCCAGTTGTTAGAATAAT
TACCATTAGATTATGCTAATGTGTACTTGTCTGTTATTTTAACAAGGTTTTTTTTTTTTT
TTTCTGTCTCAAGAAAAAAATGCAGTGCGTCTGGAGAGAGCAAAAACTTTTGTAAAAATC
AAATGTATTCATTTAGAAAGTAGGCTACTTCTGTTTTCACTGTTTGTTTTGTTTTGTTTC
TCATTGCAGAAGCTCCCTGTTAATATGCTTTTTTGAGGAAAGCCTGTGGAACACAGTGGT
TATTGCCATTGTCTTTGTTTCATCTTTAAGTTTGTCCTTCATGAGGTTTGGTGGAATTGT
GAGCACTGACTGACAGACTAGCAATATGCTATATTTTTACGTTGAAAATGTTAATGTCTT
ATTTGATGTGTACATACCTCTGTAAATAGGTGACAGTAGACCATAGCTGACATTTGCAAA
ATGTTGTTTTTGTACTCTAGAATTTCTGCATCAAATAAATAAAATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAATTTAGTTGCCCAAATAGAATGTGGTGCCTTATTCACATTGGTGCCTTGTTAAGAC
CAGGCTCAGGATGGGGATTAACAGAAATTCTTACACATCTTGTCTTCTCTTAGTACATAA
AAATATAAAGGCACTTTTTAAAAAATATATTACCTGTATTCTTTTTGAAGGTTGACTGCC
ACATTTTTTTTTTCCCTTTGGCAGTAGTCCTCTGTCATATGTGGGATTTTTTTCCCCCTC
TTATGGTCAGACACTTATTTCTGGATGTGTTTAATGTCATTCCTGATCTTCTCCAGGGTA
CTCTTCAAGACCAGCTCTGACTGAGTTGTTATGGGTGGCAACTACCCCTCCCTTCCAATT
TTGGATTCTATTTTTATGTATCTCTAGATATCACCTTTAATTCATGACTCACAGTATTAT
TAAATGGTGCAAACTTCTGTTTAACCTCAGGTGAGACAGCAGTTGCTAAGGATTAATTTG
CTAAGAGGTCAAGGGAGGACTCCTTGGGAGTTTTGGTCGGTTGTCTTCCCTCCTGCTCTT
TGGCTCCTCTCCAAAATTCATCCGGGACCACGGGCTCCTCAAGGAGCTTGTACTAAAAAG
CTGGAGCCATGGCTCTGAATTGACCAAGCACTGTGGTTTGCACAGTCAGAAGTCTGACAA
AAGCAAACCATTATGACTGCATATCTAATGTTATCAAAATTTCAACGGAGAAGATTAAGA
AAAGCAATTCTGTTTGTGTGGGACATAGACACAGTTGGCCACCCCAGTTGTTAGAATAAT
TACCATTAGATTATGCTAATGTGTACTTGTCTGTTATTTTAACAAGGTTTTTTTTTTTTT
TTTCTGTCTCAAGAAAAAAATGCAGTGCGTCTGGAGAGAGCAAAAACTTTTGTAAAAATC
AAATGTATTCATTTAGAAAGTAGGCTACTTCTGTTTTCACTGTTTGTTTTGTTTTGTTTC
TCATTGCAGAAGCTCCCTGTTAATATGCTTTTTTGAGGAAAGCCTGTGGAACACAGTGGT
TATTGCCATTGTCTTTGTTTCATCTTTAAGTTTGTCCTTCATGAGGTTTGGTGGAATTGT
GAGCACTGACTGACAGACTAGCAATATGCTATATTTTTACGTTGAAAATGTTAATGTCTT
ATTTGATGTGTACATACCTCTGTAAATAGGTGACAGTAGACCATAGCTGACATTTGCAAA
ATGTTGTTTTTGTACTCTAGAATTTCTGCATCAAATAAATAAAATGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               97-303, - strand, RNAz p=0.970682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-303, - strand, RNAz p=0.970682

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-303, gnl|bosTau2|chr22 (33016023-33015720)
               

               
               1-303, gnl|canFam2|chr20 (36306932-36306206)
               

               
               1-303, gnl|echTel1|scaffold_240347 (2361-3051)
               

               
               1-303, gnl|hg17|chr3 (57100002-57100736)
               

               
               1-303, gnl|Hg17|chr3 (57100600-57100295)
               

               
               1-303, gnl|loxAfr1|scaffold_10604 (15932-16702)
               

               
               1-303, gnl|mm7|chr14 (24539445-24538765)
               

               
               1-303, gnl|oryCun1|scaffold_198160 (95938-95170)
               

               
               1-303, gnl|panTro1|chr2 (58760503-58761237)
               

               
               1-303, gnl|rheMac2|chr2 (79286296-79285553)
               

               
               1-303, gnl|rn3|chr16 (2360084-2359385)
               


               
               544-1239, gnl|bosTau2|chr22 (33015717-33015027)
               

               
               544-1239, gnl|Hg17|chr3 (57100292-57099064)
               

               
               544-1239, gnl|Mm7|chr14 (24539415-24540039)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-303, gnl|bosTau2|chr22 (33016023-33015720)
               

               
               1-303, gnl|canFam2|chr20 (36306932-36306206)
               

               
               1-303, gnl|echTel1|scaffold_240347 (2361-3051)
               

               
               1-303, gnl|hg17|chr3 (57100002-57100736)
               

               
               1-303, gnl|Hg17|chr3 (57100600-57100295)
               

               
               1-303, gnl|loxAfr1|scaffold_10604 (15932-16702)
               

               
               1-303, gnl|mm7|chr14 (24539445-24538765)
               

               
               1-303, gnl|oryCun1|scaffold_198160 (95938-95170)
               

               
               1-303, gnl|panTro1|chr2 (58760503-58761237)
               

               
               1-303, gnl|rheMac2|chr2 (79286296-79285553)
               

               
               1-303, gnl|rn3|chr16 (2360084-2359385)
               


               
               544-1239, gnl|bosTau2|chr22 (33015717-33015027)
               

               
               544-1239, gnl|Hg17|chr3 (57100292-57099064)
               

               
               544-1239, gnl|Mm7|chr14 (24539415-24540039)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	1-303, gnl\|bosTau2\|chr22 (33016023-33015720)
	1-303, gnl\|canFam2\|chr20 (36306932-36306206)
	1-303, gnl\|echTel1\|scaffold_240347 (2361-3051)
	1-303, gnl\|hg17\|chr3 (57100002-57100736)
	1-303, gnl\|Hg17\|chr3 (57100600-57100295)
	1-303, gnl\|loxAfr1\|scaffold_10604 (15932-16702)
	1-303, gnl\|mm7\|chr14 (24539445-24538765)
	1-303, gnl\|oryCun1\|scaffold_198160 (95938-95170)
	1-303, gnl\|panTro1\|chr2 (58760503-58761237)
	1-303, gnl\|rheMac2\|chr2 (79286296-79285553)
	1-303, gnl\|rn3\|chr16 (2360084-2359385)

	544-1239, gnl\|bosTau2\|chr22 (33015717-33015027)
	544-1239, gnl\|Hg17\|chr3 (57100292-57099064)
	544-1239, gnl\|Mm7\|chr14 (24539415-24540039)

	nep (0.183925)
	fco (0.157208)
	fat (0.147427)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)