Non-Coding RNA Search

Ss1.1-Pig4-TMW8053L16.3

Sequence:


               
               CCCGGGTACTGAGTCCTTGGCCTTGGATTTCATCAGAGCAATGGAGACATTTGTTTCGTT
CAGAGAAAAGCCACCGTTTAGGTTGGAGGTGTTAACAGTTCATAGCTGCCTGCACATGTA
ACGCACTAACGGGGACACGCTGTGCTCTGGGGACCAGTTCTGTCCCCGCGGTGACTCTGT
CACGGTCGCGTTGAGTTGTCTGCATTTGTCCCATCTTTCGTTTTCCTGCAAGTCTTCAAA
AGCCAGTGCCTTAAACCCAGGGATCCTACCTGTAAGAGAGACCACCCGAGAGATCCATTG
TGGAAAGTCTTTGGGGGCAGTGGTGGTGTCAGCGTAGCAAGTGGACAAGCCTGAGTGACC
ATTTGCCTGCTGTGTCCCCTTATCCCAGAAGGACCAGTGCCCTTACGAAGGTGGCTGCAC
TGCATTCCCCCATCAAACTGCCTTCCTTAGGCTTCATCATTAAGCCGCAAAAGAAGACAC
GGGCGTGGCTCAGAAATGGGGAGCAGGGGATGTAACGTCACGTATTTTGTATCTGGCACA
CTCGCTGAAAAATAAAACATCCTAGGTGCCTCAGGATCCCTGCTTACCCAAACTGACAAC
AAGGAGAGCATGGCATTTGCCACTGAGAAAGGAGCAAAACTTGAGAAAGGGGGACCTCGA
GTTGGTCAGGGTTGGGCAGCACCAGGGCCGGCTTCGCATCCCACCTGGTGAGAGAGGAGA
CCTGCTCCCATATCCTGGGAGACCGAGGGAGATGGGCCTTCTCGGTGACCTCCTAGCATG
TCTCGGGTCATGGGTGCTGGGTTTAACAGAGCCCGCCCTTCCGATGGGAGTGCCTTTATC
AAAAGAATGACCGAGCAAAAAGCAATGATGCACTGAATTGTCTTCAGTGTCTAATGCAAA
AATAAAGGATCATGGAATGAAATCGACCCACTGCCTCTGGGCTGTAATGACGAGCTTAGC
TGTCCGTTTTTAAATTGTGTATTTATTTTTCTGACCACTCCGTTCTGGCTGGGCTCACCT
CTGTAAGAGTTTTTGCAGTCCAGTGATGGAGCCACGAGGCTGAACTGCTGGAGAGGAGAA
ACGCACTCGCTGCGGAGTGGGTTCGTGTCTTGTGTTGTGATGTAAAAACCCCACCTAAAT
GGGCCAAAGATGTTTTCCCTCTGAAAAGCAAGCAGAAATGAGAAGAGAGAGGCAAAAGGG
AGCTCCAGCCACCACGGTGACAAAAGGCCCTTGTTTGTCTATGGTACGTCATCAAGGAGG
TAGGTAGGGGGGTGCAGGATACAGCTCCTCTGCTCAGCCAGCCAGTGCAGCTTCCACTCA
GCCAGGACCACTGGAATCATACACTGTTGACCACTGACCCGTCTGTAGTATGACTCACAA
GCGAATTTGAGTGCAGATGTGCTGGCCCTCAAAGGTTTTGGGGCTTCTCTCTCAGGTTTT
AAATGTTTCAAATGTAATCATTGCTCATCAGTGCAGTTGTCAATGCAATTTTATATTCCT
TAAAAGGGGGAAGAGTGGGTTTTTCCTGTACGTGTCGAAAGAAGGAGGTAAGAGTAACAT
GCGTTTCGTTTAATTTGGAACAAGCCATAGTCTTAACGAAACTGCGGTCTGAATTTGTTA
TCCTGGACTGGCCATTGCATGTAAATACGATATGCTCTTTGGGATGTAAATCTTAGAAAT
GCAGTATGGATGTTATCATGAATAAAAACATTAATCCCAGTCTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGTACTGAGTCCTTGGCCTTGGATTTCATCAGAGCAATGGAGACATTTGTTTCGTT
CAGAGAAAAGCCACCGTTTAGGTTGGAGGTGTTAACAGTTCATAGCTGCCTGCACATGTA
ACGCACTAACGGGGACACGCTGTGCTCTGGGGACCAGTTCTGTCCCCGCGGTGACTCTGT
CACGGTCGCGTTGAGTTGTCTGCATTTGTCCCATCTTTCGTTTTCCTGCAAGTCTTCAAA
AGCCAGTGCCTTAAACCCAGGGATCCTACCTGTAAGAGAGACCACCCGAGAGATCCATTG
TGGAAAGTCTTTGGGGGCAGTGGTGGTGTCAGCGTAGCAAGTGGACAAGCCTGAGTGACC
ATTTGCCTGCTGTGTCCCCTTATCCCAGAAGGACCAGTGCCCTTACGAAGGTGGCTGCAC
TGCATTCCCCCATCAAACTGCCTTCCTTAGGCTTCATCATTAAGCCGCAAAAGAAGACAC
GGGCGTGGCTCAGAAATGGGGAGCAGGGGATGTAACGTCACGTATTTTGTATCTGGCACA
CTCGCTGAAAAATAAAACATCCTAGGTGCCTCAGGATCCCTGCTTACCCAAACTGACAAC
AAGGAGAGCATGGCATTTGCCACTGAGAAAGGAGCAAAACTTGAGAAAGGGGGACCTCGA
GTTGGTCAGGGTTGGGCAGCACCAGGGCCGGCTTCGCATCCCACCTGGTGAGAGAGGAGA
CCTGCTCCCATATCCTGGGAGACCGAGGGAGATGGGCCTTCTCGGTGACCTCCTAGCATG
TCTCGGGTCATGGGTGCTGGGTTTAACAGAGCCCGCCCTTCCGATGGGAGTGCCTTTATC
AAAAGAATGACCGAGCAAAAAGCAATGATGCACTGAATTGTCTTCAGTGTCTAATGCAAA
AATAAAGGATCATGGAATGAAATCGACCCACTGCCTCTGGGCTGTAATGACGAGCTTAGC
TGTCCGTTTTTAAATTGTGTATTTATTTTTCTGACCACTCCGTTCTGGCTGGGCTCACCT
CTGTAAGAGTTTTTGCAGTCCAGTGATGGAGCCACGAGGCTGAACTGCTGGAGAGGAGAA
ACGCACTCGCTGCGGAGTGGGTTCGTGTCTTGTGTTGTGATGTAAAAACCCCACCTAAAT
GGGCCAAAGATGTTTTCCCTCTGAAAAGCAAGCAGAAATGAGAAGAGAGAGGCAAAAGGG
AGCTCCAGCCACCACGGTGACAAAAGGCCCTTGTTTGTCTATGGTACGTCATCAAGGAGG
TAGGTAGGGGGGTGCAGGATACAGCTCCTCTGCTCAGCCAGCCAGTGCAGCTTCCACTCA
GCCAGGACCACTGGAATCATACACTGTTGACCACTGACCCGTCTGTAGTATGACTCACAA
GCGAATTTGAGTGCAGATGTGCTGGCCCTCAAAGGTTTTGGGGCTTCTCTCTCAGGTTTT
AAATGTTTCAAATGTAATCATTGCTCATCAGTGCAGTTGTCAATGCAATTTTATATTCCT
TAAAAGGGGGAAGAGTGGGTTTTTCCTGTACGTGTCGAAAGAAGGAGGTAAGAGTAACAT
GCGTTTCGTTTAATTTGGAACAAGCCATAGTCTTAACGAAACTGCGGTCTGAATTTGTTA
TCCTGGACTGGCCATTGCATGTAAATACGATATGCTCTTTGGGATGTAAATCTTAGAAAT
GCAGTATGGATGTTATCATGAATAAAAACATTAATCCCAGTCTAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               27-1720, gnl|bosTau2|chr29 (41531903-41533573)
               

               
               27-1720, gnl|Hg17|chr11 (68281302-68278927)
               

               
               27-1720, gnl|Mm7|chr19 (3279011-3280542)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1720, gnl|bosTau2|chr29 (41531903-41533573)
               

               
               27-1720, gnl|Hg17|chr11 (68281302-68278927)
               

               
               27-1720, gnl|Mm7|chr19 (3279011-3280542)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	27-1720, gnl\|bosTau2\|chr29 (41531903-41533573)
	27-1720, gnl\|Hg17\|chr11 (68281302-68278927)
	27-1720, gnl\|Mm7\|chr19 (3279011-3280542)

	ton (0.351)
	nco (0.323468)
	ute (0.265569)
	kid (0.259471)
	sug (0.254582)
	nlu (0.191681)
	cmu (0.186393)
	rec (0.17307)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	cov (0.132153)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	cly (0.120642)
	ebs (0.118301)
	cty (0.10408)