Ss1.1-Pig4-TMW8053M05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGCATATAGGGACACTTGTGGAGCTGAATAAAGCAAATGAACTTTTCTATCTTTCTCA TAAATTGGTGGATTTATATCCTAGTAATCCTGTGTCTTGGTTTGCAGTGGGATGCTATTA TCTCATGGTCGGTCATAAAAACGAACATGCCAGAAGATACCTCAGCAAAGCCACGACGCT TGAGAAGACCTATGGGCCGGCTTGGATAGCATACGGGCATTCGTTTGCAGTTGAGAGTGA ACACGACCAAGCAATGGCTGCTTACTTCACAGCAGCACAGCTGATGAAAGGGTGTCATTT GCCAATGCTCTATATTGGATTAGAATATGGATTGACCAATAACTCAAAATTAGCTGAACG ATTCTTTGGCCAAGCTCTAAGCATTGCACCAGAAGATCCTTTTGTTATGCATGAGGTTGG TGTGGTTGCCTTCCAGAATGGAGAATGGAAAACAGCAGAAAAATGGTTTCTCGATGCTTT GGAAAAAATTAAAGCAATTGGGAATGAGGTGACAGTTGACAAATGGGAACCTTTGCTGAA CAACTTGGGGCATGTCTGCAGAAAGCTTAAAAAGTACGCCGAAGCCTTGGACTACCACCG CCAGGCGCTGGTGCTCATTCCTCAGAACGCGTCCACCTACTCTGCCATAGGCTACATCCA TAGTCTGATGGGCAACTTTGAAAATGCCGTGGACTATTTCCACACAGCCCTTGGTCTTAG GCGAGATGATACATTTTCTGTTACAATGCTCGGTCATTGCATTGAAATGTACATTGGTGA TTCTGAAGCTTATATTGGAGCAGACATTAAAGACAAATTAAAATGTTATGACTTTGATGT GCATACAATGAAGACATTAAAAAACATTATTTCACCTCCATGGGATTTCAGGGAATTTGA GGTAGAAAAACAGACTGTGGAAGAAGCAGGGCTTGCACCACTGGAAACCTCAAGGAAAAC CCCAGATTCCAGACCTTCCTTGGAAGAAACCTTTGAAATTGAAATGAATGAAAGTGACAT GATGCTGGAGACATCTATGTCAGACCATAGTACATGATTCCACGTGGGTCCCAGTTCCAC TTTGTCCTGGAGCTGGTCAGCATTTTTCCTCACATCTTTACATCCTTGTCATAGCTTAAG AATTTCCCATTTTTTGGAGTTTTCTTGTGCAGCAGGTTAGGGATCTGGTGGTGTCTCTGT GGTGCGGGTCCAGTTCCTGCCGTGGAACTTTGGCGTGCTGCACGCGAGGCCGGGAAAAAA GAGAGAGAGAGTTCCCACTTCTCAGCATGCATCCAGACCAAATCTCTACATCTAGGAGTG GAGACCTGTTTTAAGAGACTGCATTGCCCACTTTGCAACAGATTTTTTCTGATCCTACGA AATAATTATACGAAGTGAAATAAAGAAGGTAAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGCATATAGGGACACTTGTGGAGCTGAATAAAGCAAATGAACTTTTCTATCTTTCTCA TAAATTGGTGGATTTATATCCTAGTAATCCTGTGTCTTGGTTTGCAGTGGGATGCTATTA TCTCATGGTCGGTCATAAAAACGAACATGCCAGAAGATACCTCAGCAAAGCCACGACGCT TGAGAAGACCTATGGGCCGGCTTGGATAGCATACGGGCATTCGTTTGCAGTTGAGAGTGA ACACGACCAAGCAATGGCTGCTTACTTCACAGCAGCACAGCTGATGAAAGGGTGTCATTT GCCAATGCTCTATATTGGATTAGAATATGGATTGACCAATAACTCAAAATTAGCTGAACG ATTCTTTGGCCAAGCTCTAAGCATTGCACCAGAAGATCCTTTTGTTATGCATGAGGTTGG TGTGGTTGCCTTCCAGAATGGAGAATGGAAAACAGCAGAAAAATGGTTTCTCGATGCTTT GGAAAAAATTAAAGCAATTGGGAATGAGGTGACAGTTGACAAATGGGAACCTTTGCTGAA CAACTTGGGGCATGTCTGCAGAAAGCTTAAAAAGTACGCCGAAGCCTTGGACTACCACCG CCAGGCGCTGGTGCTCATTCCTCAGAACGCGTCCACCTACTCTGCCATAGGCTACATCCA TAGTCTGATGGGCAACTTTGAAAATGCCGTGGACTATTTCCACACAGCCCTTGGTCTTAG GCGAGATGATACATTTTCTGTTACAATGCTCGGTCATTGCATTGAAATGTACATTGGTGA TTCTGAAGCTTATATTGGAGCAGACATTAAAGACAAATTAAAATGTTATGACTTTGATGT GCATACAATGAAGACATTAAAAAACATTATTTCACCTCCATGGGATTTCAGGGAATTTGA GGTAGAAAAACAGACTGTGGAAGAAGCAGGGCTTGCACCACTGGAAACCTCAAGGAAAAC CCCAGATTCCAGACCTTCCTTGGAAGAAACCTTTGAAATTGAAATGAATGAAAGTGACAT GATGCTGGAGACATCTATGTCAGACCATAGTACATGATTCCACGTGGGTCCCAGTTCCAC TTTGTCCTGGAGCTGGTCAGCATTTTTCCTCACATCTTTACATCCTTGTCATAGCTTAAG AATTTCCCATTTTTTGGAGTTTTCTTGTGCAGCAGGTTAGGGATCTGGTGGTGTCTCTGT GGTGCGGGTCCAGTTCCTGCCGTGGAACTTTGGCGTGCTGCACGCGAGGCCGGGAAAAAA GAGAGAGAGAGTTCCCACTTCTCAGCATGCATCCAGACCAAATCTCTACATCTAGGAGTG GAGACCTGTTTTAAGAGACTGCATTGCCCACTTTGCAACAGATTTTTTCTGATCCTACGA AATAATTATACGAAGTGAAATAAAGAAGGTAAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 291-409, - strand, RNAz p=0.54009 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 291-409, - strand, RNAz p=0.54009 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 291-444, gnl|bosTau2|chr12 (47835269-47835116) | |
| 291-444, gnl|canFam2|chr22 (64263701-64263930) | |
| 291-444, gnl|danRer3|chr9 (31861822-31861605) | |
| 291-444, gnl|echTel1|scaffold_176228 (783-563) | |
| 291-444, gnl|fr1|chrUn (184399208-184399446) | |
| 291-444, gnl|galGal2|chr1 (129957728-129957542) | |
| 291-444, gnl|hg17|chr13 (114040637-114040864) | |
| 291-444, gnl|Hg17|chr13 (114040654-114040807) | |
| 291-444, gnl|loxAfr1|scaffold_146568 (4666-4445) | |
| 291-444, gnl|mm7|chr8 (13745499-13745720) | |
| 291-444, gnl|Mm7|chr8 (13745517-13745670) | |
| 291-444, gnl|monDom2|scaffold_11 (30272366-30272155) | |
| 291-444, gnl|oryCun1|scaffold_174920 (38036-37823) | |
| 291-444, gnl|panTro1|chr14 (97695759-97695986) | |
| 291-444, gnl|rheMac2|chr17 (94349793-94350020) | |
| 291-444, gnl|rn3|chr16 (80638067-80637847) | |
| 291-444, gnl|tetNig1|chr2 (7532314-7532096) | |
| 291-444, gnl|xenTro1|scaffold_343 (736400-736188) | |
| 572-705, gnl|bosTau2|chr12 (47830508-47830375) | |
| 572-705, gnl|canFam2|chr22 (64269180-64269320) | |
| 572-705, gnl|danRer3|chr9 (31855842-31855684) | |
| 572-705, gnl|dasNov1|scaffold_84809 (2355-2505) | |
| 572-705, gnl|echTel1|scaffold_264240 (9517-9368) | |
| 572-705, gnl|fr1|chrUn (184401002-184401150) | |
| 572-705, gnl|galGal2|chr1 (129953126-129952985) | |
| 572-705, gnl|hg17|chr13 (114046457-114046607) | |
| 572-705, gnl|Hg17|chr13 (114046457-114046590) | |
| 572-705, gnl|loxAfr1|scaffold_79465 (8857-9007) | |
| 572-705, gnl|mm7|chr8 (13751693-13751843) | |
| 572-705, gnl|Mm7|chr8 (13751693-13751826) | |
| 572-705, gnl|monDom2|scaffold_11 (30268146-30267996) | |
| 572-705, gnl|oryCun1|scaffold_200963 (37779-37909) | |
| 572-705, gnl|panTro1|chr14 (97701560-97701710) | |
| 572-705, gnl|rheMac2|chr17 (94355693-94355843) | |
| 572-705, gnl|rn3|chr16 (80632420-80632270) | |
| 572-705, gnl|tetNig1|chr2 (7531286-7531138) | |
| 572-705, gnl|xenTro1|scaffold_343 (732674-732519) | |
| 770-1092, gnl|bosTau2|chr12 (47825631-47825312) | |
| 770-1092, gnl|Hg17|chr13 (114055740-114056055) | |
| 770-1092, gnl|Mm7|chr8 (13755571-13755902) | |
| 1272-1416, gnl|bosTau2|chr12 (47825279-47825134) | |
| 1272-1416, gnl|Hg17|chr13 (114056097-114056250) | |
| 1272-1416, gnl|Mm7|chr8 (13755944-13756100) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 291-444, gnl|bosTau2|chr12 (47835269-47835116) | |
| 291-444, gnl|canFam2|chr22 (64263701-64263930) | |
| 291-444, gnl|danRer3|chr9 (31861822-31861605) | |
| 291-444, gnl|echTel1|scaffold_176228 (783-563) | |
| 291-444, gnl|fr1|chrUn (184399208-184399446) | |
| 291-444, gnl|galGal2|chr1 (129957728-129957542) | |
| 291-444, gnl|hg17|chr13 (114040637-114040864) | |
| 291-444, gnl|Hg17|chr13 (114040654-114040807) | |
| 291-444, gnl|loxAfr1|scaffold_146568 (4666-4445) | |
| 291-444, gnl|mm7|chr8 (13745499-13745720) | |
| 291-444, gnl|Mm7|chr8 (13745517-13745670) | |
| 291-444, gnl|monDom2|scaffold_11 (30272366-30272155) | |
| 291-444, gnl|oryCun1|scaffold_174920 (38036-37823) | |
| 291-444, gnl|panTro1|chr14 (97695759-97695986) | |
| 291-444, gnl|rheMac2|chr17 (94349793-94350020) | |
| 291-444, gnl|rn3|chr16 (80638067-80637847) | |
| 291-444, gnl|tetNig1|chr2 (7532314-7532096) | |
| 291-444, gnl|xenTro1|scaffold_343 (736400-736188) | |
| 572-705, gnl|bosTau2|chr12 (47830508-47830375) | |
| 572-705, gnl|canFam2|chr22 (64269180-64269320) | |
| 572-705, gnl|danRer3|chr9 (31855842-31855684) | |
| 572-705, gnl|dasNov1|scaffold_84809 (2355-2505) | |
| 572-705, gnl|echTel1|scaffold_264240 (9517-9368) | |
| 572-705, gnl|fr1|chrUn (184401002-184401150) | |
| 572-705, gnl|galGal2|chr1 (129953126-129952985) | |
| 572-705, gnl|hg17|chr13 (114046457-114046607) | |
| 572-705, gnl|Hg17|chr13 (114046457-114046590) | |
| 572-705, gnl|loxAfr1|scaffold_79465 (8857-9007) | |
| 572-705, gnl|mm7|chr8 (13751693-13751843) | |
| 572-705, gnl|Mm7|chr8 (13751693-13751826) | |
| 572-705, gnl|monDom2|scaffold_11 (30268146-30267996) | |
| 572-705, gnl|oryCun1|scaffold_200963 (37779-37909) | |
| 572-705, gnl|panTro1|chr14 (97701560-97701710) | |
| 572-705, gnl|rheMac2|chr17 (94355693-94355843) | |
| 572-705, gnl|rn3|chr16 (80632420-80632270) | |
| 572-705, gnl|tetNig1|chr2 (7531286-7531138) | |
| 572-705, gnl|xenTro1|scaffold_343 (732674-732519) | |
| 770-1092, gnl|bosTau2|chr12 (47825631-47825312) | |
| 770-1092, gnl|Hg17|chr13 (114055740-114056055) | |
| 770-1092, gnl|Mm7|chr8 (13755571-13755902) | |
| 1272-1416, gnl|bosTau2|chr12 (47825279-47825134) | |
| 1272-1416, gnl|Hg17|chr13 (114056097-114056250) | |
| 1272-1416, gnl|Mm7|chr8 (13755944-13756100) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| ill (0.175593) | |
| duo (0.172801) | |
| lin (0.145603) | |
| che (0.136314) | |
| ute (0.132784) | |
| thg (0.126791) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| ill (0.175593) | |
| duo (0.172801) | |
| lin (0.145603) | |
| che (0.136314) | |
| ute (0.132784) | |
| thg (0.126791) |