Non-Coding RNA Search

Ss1.1-Pig4-TMW8053M08.5

Sequence:


               
               GCGTGCGTGAGGGCGGTGCGTCGGGCTGCAGGAGAAGATGGCGGTCTCCACAGGAGTTAA
AGTTCCTCGTAATTTTCGCTTGTTGGAAGAACTTGAAGAAGGACAAAAAGGAGTAGGCGA
TGGTACGGTTAGCTGGGGCCTTGAAGATGACGAAGACATGACACTTACAAGGTGGACAGG
CATGATTATTGGGCCACCAAGGACAAATTATGAAAACAGAATATATAGCCTGAAAATAGA
ATGCGGACCTAAATACCCAGAAGCTCCTCCATCAGTTAGATTTGTAACCAAAATTAATAT
GAATGGAATAAATAATTCCAGTGGAATGGTGGATGCACGGAGCATACCAGTGTTAGCAAA
ATGGCAAAATTCATATAGCATTAAAGTTGTACTTCAGGAGCTAAGACGTCTAATGATGTC
CAAAGAAAATATGAAGCTGCCACAGCCACCAGAAGGACAAACATACAACAATTAATTTTA
GTGGATCTGAAACTTGTCTTAAATCAACAACCTTCTACTCATGTTAATGTCTTGATCAAA
TATCACGATGCAAAATACCCACACATGAAGATAATTCCAGCTGGTGAACATGACCTGGAC
ATTTGTAAGACTATATTTAATATATGTACACCCAGTATGTTTTCGGGTAGCAGGAGGAAT
ATGCAGCACATTTTTCTTTCTTGCTAAGGCACTGTCATTTAAGCCTAACCTGGAGTACTC
AAAACAGAGCTCAGGTTTACACGTGAAAGCATGGCAAGAAGTGTCAGAGGGCTGTGGAAG
CAGGTGTGTTTCTGAAAAGGAGAAAATCTCAAGAGGGAAGAACTGAAGGGGCGTGCTGTG
TCCATCTTGCTTAGTGAAAGAGCTTCGGTTGAAATTGTCTAAAGTAGCAGGTACAATGAA
TATTGTCACAAAATGTGTTAATTTTTGAAGCGGTATGGGTGCTGACTACTAGTAGTATCA
AAAATATGTTCAGGATTGTTTTGATACCTGTATTTATAATAAAAAATGTCGTGGGGGAAG
TGGCTGAACTTCTGTTACAAGCTGTTCCTGTGTGTTCCATGTAACAGACGTGGTAAATAT
TTGTTTACAGTCTTTGTTGGACAAACCATGCATTTATGTTTAAGTGAAATCAACAAAAAG
GAAATAGGTGTATGGATATGTGATTTTGAGATTAAAGTTAGTCTTAAATTGTAAATAAAA
TGTGGAACGTGTCCTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGCGTGAGGGCGGTGCGTCGGGCTGCAGGAGAAGATGGCGGTCTCCACAGGAGTTAA
AGTTCCTCGTAATTTTCGCTTGTTGGAAGAACTTGAAGAAGGACAAAAAGGAGTAGGCGA
TGGTACGGTTAGCTGGGGCCTTGAAGATGACGAAGACATGACACTTACAAGGTGGACAGG
CATGATTATTGGGCCACCAAGGACAAATTATGAAAACAGAATATATAGCCTGAAAATAGA
ATGCGGACCTAAATACCCAGAAGCTCCTCCATCAGTTAGATTTGTAACCAAAATTAATAT
GAATGGAATAAATAATTCCAGTGGAATGGTGGATGCACGGAGCATACCAGTGTTAGCAAA
ATGGCAAAATTCATATAGCATTAAAGTTGTACTTCAGGAGCTAAGACGTCTAATGATGTC
CAAAGAAAATATGAAGCTGCCACAGCCACCAGAAGGACAAACATACAACAATTAATTTTA
GTGGATCTGAAACTTGTCTTAAATCAACAACCTTCTACTCATGTTAATGTCTTGATCAAA
TATCACGATGCAAAATACCCACACATGAAGATAATTCCAGCTGGTGAACATGACCTGGAC
ATTTGTAAGACTATATTTAATATATGTACACCCAGTATGTTTTCGGGTAGCAGGAGGAAT
ATGCAGCACATTTTTCTTTCTTGCTAAGGCACTGTCATTTAAGCCTAACCTGGAGTACTC
AAAACAGAGCTCAGGTTTACACGTGAAAGCATGGCAAGAAGTGTCAGAGGGCTGTGGAAG
CAGGTGTGTTTCTGAAAAGGAGAAAATCTCAAGAGGGAAGAACTGAAGGGGCGTGCTGTG
TCCATCTTGCTTAGTGAAAGAGCTTCGGTTGAAATTGTCTAAAGTAGCAGGTACAATGAA
TATTGTCACAAAATGTGTTAATTTTTGAAGCGGTATGGGTGCTGACTACTAGTAGTATCA
AAAATATGTTCAGGATTGTTTTGATACCTGTATTTATAATAAAAAATGTCGTGGGGGAAG
TGGCTGAACTTCTGTTACAAGCTGTTCCTGTGTGTTCCATGTAACAGACGTGGTAAATAT
TTGTTTACAGTCTTTGTTGGACAAACCATGCATTTATGTTTAAGTGAAATCAACAAAAAG
GAAATAGGTGTATGGATATGTGATTTTGAGATTAAAGTTAGTCTTAAATTGTAAATAAAA
TGTGGAACGTGTCCTCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30582327|gb|AAP35390.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30582327|gb|AAP35390.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               706-860, - strand, RNAz p=0.840201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               706-860, - strand, RNAz p=0.840201

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               197-992, gnl|bosTau2|chr11 (59794558-59793771)
               

               
               197-992, gnl|Hg17|chr8 (49135794-49136459)
               

               
               197-992, gnl|Mm7|chr15 (31558773-31558000)
               


               
               199-471, gnl|bosTau2|chr10 (42328969-42329225)
               

               
               199-471, gnl|Mm7|chr15 (31558770-31558499)
               


               
               1004-1221, gnl|bosTau2|chr14 (12255707-12255922)
               

               
               1004-1221, gnl|Mm7|chr6 (100695837-100696031)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-992, gnl|bosTau2|chr11 (59794558-59793771)
               

               
               197-992, gnl|Hg17|chr8 (49135794-49136459)
               

               
               197-992, gnl|Mm7|chr15 (31558773-31558000)
               


               
               199-471, gnl|bosTau2|chr10 (42328969-42329225)
               

               
               199-471, gnl|Mm7|chr15 (31558770-31558499)
               


               
               1004-1221, gnl|bosTau2|chr14 (12255707-12255922)
               

               
               1004-1221, gnl|Mm7|chr6 (100695837-100696031)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               cbe (1.43541)
               

               
               fco (0.628832)
               

               
               fce (0.543183)
               

               
               gul (0.532765)
               

               
               ldo (0.485013)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.43541)
               

               
               fco (0.628832)
               

               
               fce (0.543183)
               

               
               gul (0.532765)
               

               
               ldo (0.485013)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	197-992, gnl\|bosTau2\|chr11 (59794558-59793771)
	197-992, gnl\|Hg17\|chr8 (49135794-49136459)
	197-992, gnl\|Mm7\|chr15 (31558773-31558000)

	199-471, gnl\|bosTau2\|chr10 (42328969-42329225)
	199-471, gnl\|Mm7\|chr15 (31558770-31558499)

	1004-1221, gnl\|bosTau2\|chr14 (12255707-12255922)
	1004-1221, gnl\|Mm7\|chr6 (100695837-100696031)

	cbe (1.43541)
	fco (0.628832)
	fce (0.543183)
	gul (0.532765)
	ldo (0.485013)
	aor (0.390549)
	ret (0.3862)
	elu (0.385356)
	spc (0.340097)
	nco (0.323468)
	bfe (0.299715)
	liv (0.292569)
	hyp (0.285673)
	ssp (0.271039)
	ste (0.270416)
	ova (0.258264)
	thg (0.253582)
	pgl (0.236967)
	mgp (0.230681)
	cty (0.20816)
	fcc (0.197785)
	eje (0.197668)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	duo (0.172801)
	nje (0.16592)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)