Ss1.1-Pig4-TMW8053N11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTCCGTCAGAGGCTGCTCTTTATTCCCTGCAGCCCCCAAAGGACCACGGCTG GCAACGTACATCCTTTAAAAAGCAAAAGCAGAATGAAGAAACCATAGGCAGGAGCCCCAT GCATTTTCATTAGAAAGAGCGCTGGACGGTGCCCACGCCTGGAGTCGGGCGTCTGCTGCA GGCCACAGCCCACACTCCCCCGACACGCAGGCCGAACCAGTGGCCCAGATGCTTCAGGAG ACGGCACGAGACAGCATCCGAAAGCACTTTACGACACGGGGTTTGCTTCCCATGGACATT TCTTTTTAAAAAAATATAATAACTTAGTTTGCATGTTACAGCATTCCCAACAGGTCAGTC GGGGAGTCCTCAGCCGCGACCTCTGCAGCCTGAGCGCCGGGCACCCGGCGCTCACTCCGT GCCCACCTCGCAGGGGTTCAGGCCCCTCTCCTCGGCATCCCTGTACACCCTCTGGAAGTC CTTGAAGCGCGGGGCGCAGCCAAGCCAGGCCTCCCCAAAGTGCATGTGGCCAGTGAAGAG GAACTCGCCACGCCCGGGTCGCACGCCGCACTCCAGCAGTGTGGACACGCGGCCCCGCCA GCCGCCGCCCCCAGGGGCCGGCCGGAAGACCCTGCTCTTCTGCCGGTACAGCCGGCTCAC GTGCAGGTGGATCACCGACTCCTGCCGCTCCGGCTCGTGGGTGACGTCCTGGATGGAGCC TCGGACGACAAAGTCGCTGGTGCAGACCGCCAGGAGCACCTCCGTGTGGCTGCACGGACG GCACGGGGCCGACAGGCCATGCAGGTCCGGCCCCGCGCGCCGGCTGGTCAGCTCGTACTG GAAGCCCGTGGTCCTCCTGCCGATGTCCTGCTGGGGCGTCGCCTCCACGAACAGCCCGCC CTGCTCCAAGCCGAAGCAGGGTGCCCGGCTGGGCCCGGGGTCCCCGTCCCGCAGCAGCAG TCTCAGCTCTCCAGTCTTTTCCAGATAAATACTGGCCCCCGAGGAGTTCCTGAGGGGCTT GATGCACAGGGTCAGGGGCCGGGAGGGCGAGAGCGTGTTGGGCCGCAGGTTCACGATGAG TGCGCCCGTCGGGTAGGCCCACTCGACGGTGCCCGCAGAGCAGCGCAGGTACACCTGTTC CACCTCCTTCCTGTGGGCCTCGTGCGTCAGCCCGCTTCCCTTCCAGCTGCACAGGTCGCT CGAGTACTGCGCGCCCGCGCCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTCCGTCAGAGGCTGCTCTTTATTCCCTGCAGCCCCCAAAGGACCACGGCTG GCAACGTACATCCTTTAAAAAGCAAAAGCAGAATGAAGAAACCATAGGCAGGAGCCCCAT GCATTTTCATTAGAAAGAGCGCTGGACGGTGCCCACGCCTGGAGTCGGGCGTCTGCTGCA GGCCACAGCCCACACTCCCCCGACACGCAGGCCGAACCAGTGGCCCAGATGCTTCAGGAG ACGGCACGAGACAGCATCCGAAAGCACTTTACGACACGGGGTTTGCTTCCCATGGACATT TCTTTTTAAAAAAATATAATAACTTAGTTTGCATGTTACAGCATTCCCAACAGGTCAGTC GGGGAGTCCTCAGCCGCGACCTCTGCAGCCTGAGCGCCGGGCACCCGGCGCTCACTCCGT GCCCACCTCGCAGGGGTTCAGGCCCCTCTCCTCGGCATCCCTGTACACCCTCTGGAAGTC CTTGAAGCGCGGGGCGCAGCCAAGCCAGGCCTCCCCAAAGTGCATGTGGCCAGTGAAGAG GAACTCGCCACGCCCGGGTCGCACGCCGCACTCCAGCAGTGTGGACACGCGGCCCCGCCA GCCGCCGCCCCCAGGGGCCGGCCGGAAGACCCTGCTCTTCTGCCGGTACAGCCGGCTCAC GTGCAGGTGGATCACCGACTCCTGCCGCTCCGGCTCGTGGGTGACGTCCTGGATGGAGCC TCGGACGACAAAGTCGCTGGTGCAGACCGCCAGGAGCACCTCCGTGTGGCTGCACGGACG GCACGGGGCCGACAGGCCATGCAGGTCCGGCCCCGCGCGCCGGCTGGTCAGCTCGTACTG GAAGCCCGTGGTCCTCCTGCCGATGTCCTGCTGGGGCGTCGCCTCCACGAACAGCCCGCC CTGCTCCAAGCCGAAGCAGGGTGCCCGGCTGGGCCCGGGGTCCCCGTCCCGCAGCAGCAG TCTCAGCTCTCCAGTCTTTTCCAGATAAATACTGGCCCCCGAGGAGTTCCTGAGGGGCTT GATGCACAGGGTCAGGGGCCGGGAGGGCGAGAGCGTGTTGGGCCGCAGGTTCACGATGAG TGCGCCCGTCGGGTAGGCCCACTCGACGGTGCCCGCAGAGCAGCGCAGGTACACCTGTTC CACCTCCTTCCTGTGGGCCTCGTGCGTCAGCCCGCTTCCCTTCCAGCTGCACAGGTCGCT CGAGTACTGCGCGCCCGCGCCGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 34-382, gnl|bosTau2|chr19 (44077737-44077378) | |
| 34-382, gnl|Hg17|chr17 (78646248-78645910) | |
| 34-382, gnl|Mm7|chr11 (121825563-121825252) | |
| 398-729, gnl|bosTau2|chr19 (44077296-44076959) | |
| 398-729, gnl|canFam2|chrUn (12176591-12176926) | |
| 398-729, gnl|canFam2|chrUn (12176591-12176926) | |
| 398-729, gnl|danRer3|chr19 (60953121-60952785) | |
| 398-729, gnl|danRer3|chr19 (60953121-60952785) | |
| 398-729, gnl|dasNov1|scaffold_181052 (1068-1407) | |
| 398-729, gnl|dasNov1|scaffold_181052 (1068-1413) | |
| 398-729, gnl|echTel1|scaffold_294396 (6580-6259) | |
| 398-729, gnl|echTel1|scaffold_294396 (6580-6259) | |
| 398-729, gnl|fr1|chrUn (127448837-127448480) | |
| 398-729, gnl|fr1|chrUn (224001248-224000924) | |
| 398-729, gnl|galGal2|chr18 (2924321-2923975) | |
| 398-729, gnl|galGal2|chr18 (2924321-2923967) | |
| 398-729, gnl|hg17|chr17 (78645395-78645747) | |
| 398-729, gnl|Hg17|chr17 (78645787-78645420) | |
| 398-729, gnl|hg17|chr17_random (973210-973562) | |
| 398-729, gnl|loxAfr1|scaffold_142963 (333-670) | |
| 398-729, gnl|loxAfr1|scaffold_142963 (333-672) | |
| 398-729, gnl|mm7|chr11 (121824761-121825102) | |
| 398-729, gnl|mm7|chr11 (121824761-121825112) | |
| 398-729, gnl|Mm7|chr11 (121825114-121824781) | |
| 398-729, gnl|monDom2|scaffold_49 (9889984-9890317) | |
| 398-729, gnl|monDom2|scaffold_49 (9889984-9890323) | |
| 398-729, gnl|oryCun1|scaffold_179360 (939-607) | |
| 398-729, gnl|oryCun1|scaffold_179360 (939-598) | |
| 398-729, gnl|panTro1|chr19 (82467311-82467657) | |
| 398-729, gnl|panTro1|chr19 (82467311-82467671) | |
| 398-729, gnl|rheMac2|chr16 (78613498-78613844) | |
| 398-729, gnl|rheMac2|chr16 (78613498-78613858) | |
| 398-729, gnl|rn3|chrUn (5903604-5903266) | |
| 398-729, gnl|rn3|chrUn (5903604-5903256) | |
| 398-729, gnl|tetNig1|chr3 (10767923-10767601) | |
| 398-729, gnl|tetNig1|chr3 (10767923-10767601) | |
| 398-729, gnl|xenTro1|scaffold_856 (72961-73297) | |
| 398-729, gnl|xenTro1|scaffold_856 (72961-73297) | |
| 789-1176, gnl|bosTau2|chr19 (44069053-44068666) | |
| 789-1176, gnl|canFam2|chrUn (12171044-12171379) | |
| 789-1176, gnl|danRer3|chr19 (60961974-60961645) | |
| 789-1176, gnl|dasNov1|scaffold_151437 (5722-6061) | |
| 789-1176, gnl|fr1|chrUn (127451489-127451150) | |
| 789-1176, gnl|galGal2|chr18 (2939047-2938707) | |
| 789-1176, gnl|hg17|chr17 (78636076-78636412) | |
| 789-1176, gnl|Hg17|chr17 (78636488-78636101) | |
| 789-1176, gnl|mm7|chr11 (121816746-121817084) | |
| 789-1176, gnl|Mm7|chr11 (121817160-121816773) | |
| 789-1176, gnl|monDom2|scaffold_49 (9886086-9886445) | |
| 789-1176, gnl|oryCun1|scaffold_182813 (11163-11504) | |
| 789-1176, gnl|panTro1|chr19 (82455240-82455576) | |
| 789-1176, gnl|rheMac2|chr16 (78602319-78602654) | |
| 789-1176, gnl|rn3|chrUn (5911711-5911373) | |
| 789-1176, gnl|tetNig1|chr3 (10770386-10770047) | |
| 789-1176, gnl|xenTro1|scaffold_856 (65655-65976) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-382, gnl|bosTau2|chr19 (44077737-44077378) | |
| 34-382, gnl|Hg17|chr17 (78646248-78645910) | |
| 34-382, gnl|Mm7|chr11 (121825563-121825252) | |
| 398-729, gnl|bosTau2|chr19 (44077296-44076959) | |
| 398-729, gnl|canFam2|chrUn (12176591-12176926) | |
| 398-729, gnl|canFam2|chrUn (12176591-12176926) | |
| 398-729, gnl|danRer3|chr19 (60953121-60952785) | |
| 398-729, gnl|danRer3|chr19 (60953121-60952785) | |
| 398-729, gnl|dasNov1|scaffold_181052 (1068-1407) | |
| 398-729, gnl|dasNov1|scaffold_181052 (1068-1413) | |
| 398-729, gnl|echTel1|scaffold_294396 (6580-6259) | |
| 398-729, gnl|echTel1|scaffold_294396 (6580-6259) | |
| 398-729, gnl|fr1|chrUn (127448837-127448480) | |
| 398-729, gnl|fr1|chrUn (224001248-224000924) | |
| 398-729, gnl|galGal2|chr18 (2924321-2923975) | |
| 398-729, gnl|galGal2|chr18 (2924321-2923967) | |
| 398-729, gnl|hg17|chr17 (78645395-78645747) | |
| 398-729, gnl|Hg17|chr17 (78645787-78645420) | |
| 398-729, gnl|hg17|chr17_random (973210-973562) | |
| 398-729, gnl|loxAfr1|scaffold_142963 (333-670) | |
| 398-729, gnl|loxAfr1|scaffold_142963 (333-672) | |
| 398-729, gnl|mm7|chr11 (121824761-121825102) | |
| 398-729, gnl|mm7|chr11 (121824761-121825112) | |
| 398-729, gnl|Mm7|chr11 (121825114-121824781) | |
| 398-729, gnl|monDom2|scaffold_49 (9889984-9890317) | |
| 398-729, gnl|monDom2|scaffold_49 (9889984-9890323) | |
| 398-729, gnl|oryCun1|scaffold_179360 (939-607) | |
| 398-729, gnl|oryCun1|scaffold_179360 (939-598) | |
| 398-729, gnl|panTro1|chr19 (82467311-82467657) | |
| 398-729, gnl|panTro1|chr19 (82467311-82467671) | |
| 398-729, gnl|rheMac2|chr16 (78613498-78613844) | |
| 398-729, gnl|rheMac2|chr16 (78613498-78613858) | |
| 398-729, gnl|rn3|chrUn (5903604-5903266) | |
| 398-729, gnl|rn3|chrUn (5903604-5903256) | |
| 398-729, gnl|tetNig1|chr3 (10767923-10767601) | |
| 398-729, gnl|tetNig1|chr3 (10767923-10767601) | |
| 398-729, gnl|xenTro1|scaffold_856 (72961-73297) | |
| 398-729, gnl|xenTro1|scaffold_856 (72961-73297) | |
| 789-1176, gnl|bosTau2|chr19 (44069053-44068666) | |
| 789-1176, gnl|canFam2|chrUn (12171044-12171379) | |
| 789-1176, gnl|danRer3|chr19 (60961974-60961645) | |
| 789-1176, gnl|dasNov1|scaffold_151437 (5722-6061) | |
| 789-1176, gnl|fr1|chrUn (127451489-127451150) | |
| 789-1176, gnl|galGal2|chr18 (2939047-2938707) | |
| 789-1176, gnl|hg17|chr17 (78636076-78636412) | |
| 789-1176, gnl|Hg17|chr17 (78636488-78636101) | |
| 789-1176, gnl|mm7|chr11 (121816746-121817084) | |
| 789-1176, gnl|Mm7|chr11 (121817160-121816773) | |
| 789-1176, gnl|monDom2|scaffold_49 (9886086-9886445) | |
| 789-1176, gnl|oryCun1|scaffold_182813 (11163-11504) | |
| 789-1176, gnl|panTro1|chr19 (82455240-82455576) | |
| 789-1176, gnl|rheMac2|chr16 (78602319-78602654) | |
| 789-1176, gnl|rn3|chrUn (5911711-5911373) | |
| 789-1176, gnl|tetNig1|chr3 (10770386-10770047) | |
| 789-1176, gnl|xenTro1|scaffold_856 (65655-65976) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| eep (0.367692) | |
| jca (0.22792) | |
| jej (0.197844) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| jca (0.22792) | |
| jej (0.197844) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eru (0.120048) |