Non-Coding RNA Search

Ss1.1-Pig4-TMW8053N14.5

Sequence:


               
               TTCCCGGAGCGAGTCCTTGTCGCTGAGCTTTCCAGAACAGCAGCTGCAGCAGCAATGGCC
CCACCCTGGGTGCCCGCTGTGGGCTTCACGCTGGTGCCCAGCCTGGGGGGCTTCCTGAGC
TCGCGCAATGTCCTCGGAAAGGGCCTCCACTGGTACGCCGGCTTGCAGAAGCCCTCGTGG
CACCCGCCGCACTGGACACTGGCCCCCATCTGGGGCACACTCTACTCGGCCATGGGGTAT
GGCTCCTACATGATCTGGAAAGAGCTGGGGGGCTTCTCGGAGGAGGCTGTGGTTCCCCTG
GGCCTCTACGCTGGGCAGCTGGCTCTGAACTGGGCATGGCCTCCCCTCTTCTTTGGCGCC
CGACAAATGGGTTGGGCCCTGGTGGACCTCGTGCTGACGGGTGGAGTGGCAGCAGCCACG
GCGGTGGCCTGGTATCAGGTGAGCCCTCTGGCCGCCCGCCTGCTGTACCCCTACCTGGCC
TGGCTGGCCTTCGCGGCCACGCTCAACTACTGCGTGTGGCGGGACAACCAGGGCCGCCGT
GGTGGCCGCCGGCCCTCGGAGTGAGAGTGCCCCGGCCTCCAAGGACCGCAGCCGCTGCAT
GTCCAGTGTTGCCGGTGACGGTGGCCCCTGGGCTGCCTGTCTGTCTGGTCTCAGCCCAGG
GGGTCACCAGCCGATTCAGAGGTGCTCCAGGCTGAGACCCTGCCCCAGAAACAGCGTCCT
GCGCTTTCTGCACTGCTCGCTCTCAGAATGAGGAAATTTATAAGCCAAATAAAGTTTTTA
ACCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCGGAGCGAGTCCTTGTCGCTGAGCTTTCCAGAACAGCAGCTGCAGCAGCAATGGCC
CCACCCTGGGTGCCCGCTGTGGGCTTCACGCTGGTGCCCAGCCTGGGGGGCTTCCTGAGC
TCGCGCAATGTCCTCGGAAAGGGCCTCCACTGGTACGCCGGCTTGCAGAAGCCCTCGTGG
CACCCGCCGCACTGGACACTGGCCCCCATCTGGGGCACACTCTACTCGGCCATGGGGTAT
GGCTCCTACATGATCTGGAAAGAGCTGGGGGGCTTCTCGGAGGAGGCTGTGGTTCCCCTG
GGCCTCTACGCTGGGCAGCTGGCTCTGAACTGGGCATGGCCTCCCCTCTTCTTTGGCGCC
CGACAAATGGGTTGGGCCCTGGTGGACCTCGTGCTGACGGGTGGAGTGGCAGCAGCCACG
GCGGTGGCCTGGTATCAGGTGAGCCCTCTGGCCGCCCGCCTGCTGTACCCCTACCTGGCC
TGGCTGGCCTTCGCGGCCACGCTCAACTACTGCGTGTGGCGGGACAACCAGGGCCGCCGT
GGTGGCCGCCGGCCCTCGGAGTGAGAGTGCCCCGGCCTCCAAGGACCGCAGCCGCTGCAT
GTCCAGTGTTGCCGGTGACGGTGGCCCCTGGGCTGCCTGTCTGTCTGGTCTCAGCCCAGG
GGGTCACCAGCCGATTCAGAGGTGCTCCAGGCTGAGACCCTGCCCCAGAAACAGCGTCCT
GCGCTTTCTGCACTGCTCGCTCTCAGAATGAGGAAATTTATAAGCCAAATAAAGTTTTTA
ACCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6UN27_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6UN27_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               611-707, - strand, RNAz p=0.879624

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-707, - strand, RNAz p=0.879624

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               25-239, gnl|bosTau2|chr5 (71816736-71816950)
               

               
               25-239, gnl|Hg17|chr22 (41879713-41879927)
               

               
               25-239, gnl|Mm7|chr15 (83653705-83653919)
               


               
               375-784, gnl|bosTau2|chr5 (71820302-71820733)
               

               
               375-784, gnl|Hg17|chr22 (41883306-41883740)
               

               
               375-784, gnl|Mm7|chr15 (83656090-83656514)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-239, gnl|bosTau2|chr5 (71816736-71816950)
               

               
               25-239, gnl|Hg17|chr22 (41879713-41879927)
               

               
               25-239, gnl|Mm7|chr15 (83653705-83653919)
               


               
               375-784, gnl|bosTau2|chr5 (71820302-71820733)
               

               
               375-784, gnl|Hg17|chr22 (41883306-41883740)
               

               
               375-784, gnl|Mm7|chr15 (83656090-83656514)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               nco (0.808669)
               

               
               nlu (0.766724)
               

               
               nje (0.49776)
               

               
               nbm (0.496623)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.808669)
               

               
               nlu (0.766724)
               

               
               nje (0.49776)
               

               
               nbm (0.496623)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	25-239, gnl\|bosTau2\|chr5 (71816736-71816950)
	25-239, gnl\|Hg17\|chr22 (41879713-41879927)
	25-239, gnl\|Mm7\|chr15 (83653705-83653919)

	375-784, gnl\|bosTau2\|chr5 (71820302-71820733)
	375-784, gnl\|Hg17\|chr22 (41883306-41883740)
	375-784, gnl\|Mm7\|chr15 (83656090-83656514)

	nco (0.808669)
	nlu (0.766724)
	nje (0.49776)
	nbm (0.496623)
	col (0.390016)
	elu (0.385356)
	ill (0.351185)
	med (0.348756)
	cly (0.241284)
	jej (0.197844)
	nep (0.183925)
	ton (0.1755)
	eye (0.170503)
	cki (0.165235)
	eli (0.151814)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)