Ss1.1-Pig4-TMW8053N15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCCACGGTTCATTGGATTTTGCATTCAGAAAGGAGCAGACTGTGGAGCAAAGGTGGTG GAGAAGACGAATCCTACAGAACCAGTTGGAGTGGTTTGCCGCGTGGATGGAGTCTATCAA GTGGTAGAATACAGTGAGATTTCTCTGGCAACAGCTCAAAAACGAAGCTCTGATGGACGA CTGCTGTTCAACGCAGGGAACATTGCCAACCATTTCTTCACCGTACCATTTCTGAGAGAC GTTGTCAACATTTATGAACCTCAGTTGCAGCACCATGTAGCCCAAAAGAAAATTCCATAT GTGGATTCCTTGGGGCAGTTAATTAAGCCAGACAAACCAAATGGAATAAAGATGGAAAAA TTTGTCTTTGACATCTTCCAGTTTGCAAAGAAGTTTGTGGTGTATGAAGTATTACGGGAA GATGAATTTTCCCCACTGAAGAATGCAGACAGTCAGAATGGGAAAGACAACCCTACTACT GCAAGGCATGCTTTGATGTCCCTCCACCATTGCTGGGTCCTCAACGCCGGCGGCCACTTC ATAGATGAAAATGGCTCTCGCCTCCCAGCAATTCCCCGCAGTGCTACCAATGGAAAGTCA GAGACCATCACAGCTGATGTCAATCACAACTTGAAGGATGCCAATGATGTACCAATCCAA TGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAAGGACTAGAAAGTTATGTGGCAGAT AAAGAATTCCATGCACCTTTAATCATTGATGAGAATGGAGTCCATGAGCTGGTGAAGAAT GGTATATGAGCCAGATAACAAGTTCCACCACAATAAGAATAGCTTTTATTTTTGATAGAC CAACTGTGAACCTACAGGACCTCTCCTGGAATACTCATTTGAATATCCACAGGCTTTCAT TTTGGTTATTGAACTCTTGTAACTACTACATATTCCCCAAGATCCAGATGACTGAACTTC AGAAGGTGTTTTCATGATTCTCAGCTGATTGAAGGTCTTATTTATATTTTTCAATTGTAT AATTTTTTTTTCCAACCCAAGGAAAACATCGACCATCTAGGAAATTTCCTACAGCTTAAG TATTGCTAGATGTTCACCATCACTTTACTTGAAGCCGGAAGCATTTGTTTTTGAAGTTGT ACATAGTAATAATATGTCATTGTACATGTTGAAAGGTTTCTATGGTACTAAAAATTTGTT TTATTTTATCAAAAATTAAATTTTTTTAAGAAAATAATTGGACAGTTAAATAAACTTTTC CTCTTGTCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCCACGGTTCATTGGATTTTGCATTCAGAAAGGAGCAGACTGTGGAGCAAAGGTGGTG GAGAAGACGAATCCTACAGAACCAGTTGGAGTGGTTTGCCGCGTGGATGGAGTCTATCAA GTGGTAGAATACAGTGAGATTTCTCTGGCAACAGCTCAAAAACGAAGCTCTGATGGACGA CTGCTGTTCAACGCAGGGAACATTGCCAACCATTTCTTCACCGTACCATTTCTGAGAGAC GTTGTCAACATTTATGAACCTCAGTTGCAGCACCATGTAGCCCAAAAGAAAATTCCATAT GTGGATTCCTTGGGGCAGTTAATTAAGCCAGACAAACCAAATGGAATAAAGATGGAAAAA TTTGTCTTTGACATCTTCCAGTTTGCAAAGAAGTTTGTGGTGTATGAAGTATTACGGGAA GATGAATTTTCCCCACTGAAGAATGCAGACAGTCAGAATGGGAAAGACAACCCTACTACT GCAAGGCATGCTTTGATGTCCCTCCACCATTGCTGGGTCCTCAACGCCGGCGGCCACTTC ATAGATGAAAATGGCTCTCGCCTCCCAGCAATTCCCCGCAGTGCTACCAATGGAAAGTCA GAGACCATCACAGCTGATGTCAATCACAACTTGAAGGATGCCAATGATGTACCAATCCAA TGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAAGGACTAGAAAGTTATGTGGCAGAT AAAGAATTCCATGCACCTTTAATCATTGATGAGAATGGAGTCCATGAGCTGGTGAAGAAT GGTATATGAGCCAGATAACAAGTTCCACCACAATAAGAATAGCTTTTATTTTTGATAGAC CAACTGTGAACCTACAGGACCTCTCCTGGAATACTCATTTGAATATCCACAGGCTTTCAT TTTGGTTATTGAACTCTTGTAACTACTACATATTCCCCAAGATCCAGATGACTGAACTTC AGAAGGTGTTTTCATGATTCTCAGCTGATTGAAGGTCTTATTTATATTTTTCAATTGTAT AATTTTTTTTTCCAACCCAAGGAAAACATCGACCATCTAGGAAATTTCCTACAGCTTAAG TATTGCTAGATGTTCACCATCACTTTACTTGAAGCCGGAAGCATTTGTTTTTGAAGTTGT ACATAGTAATAATATGTCATTGTACATGTTGAAAGGTTTCTATGGTACTAAAAATTTGTT TTATTTTATCAAAAATTAAATTTTTTTAAGAAAATAATTGGACAGTTAAATAAACTTTTC CTCTTGTCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 390-578, - strand, RNAz p=0.943249 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 390-578, - strand, RNAz p=0.943249 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 42-248, gnl|bosTau2|chr3 (7284341-7284547) | |
| 42-248, gnl|canFam2|chr38 (23199620-23199387) | |
| 42-248, gnl|canFam2|chr38 (23199602-23199407) | |
| 42-248, gnl|danRer3|chr5 (25227805-25228013) | |
| 42-248, gnl|danRer3|chr5 (25227810-25228005) | |
| 42-248, gnl|dasNov1|scaffold_192825 (686-883) | |
| 42-248, gnl|dasNov1|scaffold_20828 (40151-40385) | |
| 42-248, gnl|echTel1|scaffold_280755 (61599-61836) | |
| 42-248, gnl|echTel1|scaffold_302285 (4991-5169) | |
| 42-248, gnl|fr1|chrUn (71379775-71379991) | |
| 42-248, gnl|fr1|chrUn (71379784-71379979) | |
| 42-248, gnl|galGal2|chr8 (3750207-3749999) | |
| 42-248, gnl|galGal2|chr8 (3750202-3750007) | |
| 42-248, gnl|hg17|chr1 (159288904-159289137) | |
| 42-248, gnl|Hg17|chr1 (159288913-159289116) | |
| 42-248, gnl|hg17|chr17 (42800786-42800981) | |
| 42-248, gnl|loxAfr1|scaffold_41256 (13243-13031) | |
| 42-248, gnl|loxAfr1|scaffold_41256 (13243-13051) | |
| 42-248, gnl|mm7|chr1 (170127634-170127400) | |
| 42-248, gnl|mm7|chr1 (170127611-170127420) | |
| 42-248, gnl|Mm7|chr1 (170127624-170127419) | |
| 42-248, gnl|monDom2|scaffold_16 (12380344-12380576) | |
| 42-248, gnl|monDom2|scaffold_16 (12380366-12380556) | |
| 42-248, gnl|oryCun1|scaffold_126281 (4380-4128) | |
| 42-248, gnl|oryCun1|scaffold_126281 (4339-4148) | |
| 42-248, gnl|panTro1|chr1 (141448366-141448599) | |
| 42-248, gnl|panTro1|chr19 (62312452-62312257) | |
| 42-248, gnl|rheMac2|chr1 (141123409-141123644) | |
| 42-248, gnl|rheMac2|chr16 (57440967-57441161) | |
| 42-248, gnl|rn3|chr13 (85976959-85976725) | |
| 42-248, gnl|rn3|chr6 (16897268-16897463) | |
| 42-248, gnl|tetNig1|chr1_random (3064389-3064165) | |
| 42-248, gnl|tetNig1|chr1_random (3064380-3064185) | |
| 42-248, gnl|xenTro1|scaffold_74 (1209759-1209970) | |
| 42-248, gnl|xenTro1|scaffold_74 (1209772-1209963) | |
| 390-578, gnl|bosTau2|chr3 (7286430-7286618) | |
| 390-578, gnl|canFam2|chr38 (23197210-23197029) | |
| 390-578, gnl|canFam2|chr38 (23197187-23197000) | |
| 390-578, gnl|danRer3|chr5 (25229595-25229770) | |
| 390-578, gnl|danRer3|chr5 (25229615-25229793) | |
| 390-578, gnl|dasNov1|scaffold_192825 (1025-1183) | |
| 390-578, gnl|dasNov1|scaffold_192825 (1025-1212) | |
| 390-578, gnl|echTel1|scaffold_280755 (66062-66243) | |
| 390-578, gnl|echTel1|scaffold_302285 (5311-5499) | |
| 390-578, gnl|fr1|chrUn (71380594-71380773) | |
| 390-578, gnl|fr1|chrUn (71380615-71380799) | |
| 390-578, gnl|galGal2|chr8 (3749671-3749504) | |
| 390-578, gnl|galGal2|chr8 (3749661-3749475) | |
| 390-578, gnl|hg17|chr1 (159291749-159291930) | |
| 390-578, gnl|Hg17|chr1 (159291771-159291959) | |
| 390-578, gnl|hg17|chr17 (42801140-42801317) | |
| 390-578, gnl|loxAfr1|scaffold_41256 (11078-10897) | |
| 390-578, gnl|loxAfr1|scaffold_41256 (11055-10868) | |
| 390-578, gnl|mm7|chr1 (170125957-170125778) | |
| 390-578, gnl|mm7|chr1 (170125935-170125749) | |
| 390-578, gnl|Mm7|chr1 (170125935-170125747) | |
| 390-578, gnl|monDom2|scaffold_16 (12382948-12383126) | |
| 390-578, gnl|monDom2|scaffold_16 (12382968-12383154) | |
| 390-578, gnl|oryCun1|scaffold_126281 (406-225) | |
| 390-578, gnl|oryCun1|scaffold_126281 (382-196) | |
| 390-578, gnl|panTro1|chr1 (141451200-141451381) | |
| 390-578, gnl|panTro1|chr19 (62312098-62311921) | |
| 390-578, gnl|rheMac2|chr1 (141126814-141126995) | |
| 390-578, gnl|rheMac2|chr16 (57441303-57441480) | |
| 390-578, gnl|rn3|chr13 (85975296-85975117) | |
| 390-578, gnl|rn3|chr6 (16897605-16897793) | |
| 390-578, gnl|tetNig1|chr1_random (3063776-3063608) | |
| 390-578, gnl|tetNig1|chr1_random (3063766-3063580) | |
| 390-578, gnl|xenTro1|scaffold_74 (1211511-1211674) | |
| 390-578, gnl|xenTro1|scaffold_74 (1211516-1211703) | |
| 697-1268, gnl|bosTau2|chr3 (7292470-7293043) | |
| 697-1268, gnl|Hg17|chr1 (159300719-159301279) | |
| 697-1268, gnl|Mm7|chr1 (170119048-170118479) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-248, gnl|bosTau2|chr3 (7284341-7284547) | |
| 42-248, gnl|canFam2|chr38 (23199620-23199387) | |
| 42-248, gnl|canFam2|chr38 (23199602-23199407) | |
| 42-248, gnl|danRer3|chr5 (25227805-25228013) | |
| 42-248, gnl|danRer3|chr5 (25227810-25228005) | |
| 42-248, gnl|dasNov1|scaffold_192825 (686-883) | |
| 42-248, gnl|dasNov1|scaffold_20828 (40151-40385) | |
| 42-248, gnl|echTel1|scaffold_280755 (61599-61836) | |
| 42-248, gnl|echTel1|scaffold_302285 (4991-5169) | |
| 42-248, gnl|fr1|chrUn (71379775-71379991) | |
| 42-248, gnl|fr1|chrUn (71379784-71379979) | |
| 42-248, gnl|galGal2|chr8 (3750207-3749999) | |
| 42-248, gnl|galGal2|chr8 (3750202-3750007) | |
| 42-248, gnl|hg17|chr1 (159288904-159289137) | |
| 42-248, gnl|Hg17|chr1 (159288913-159289116) | |
| 42-248, gnl|hg17|chr17 (42800786-42800981) | |
| 42-248, gnl|loxAfr1|scaffold_41256 (13243-13031) | |
| 42-248, gnl|loxAfr1|scaffold_41256 (13243-13051) | |
| 42-248, gnl|mm7|chr1 (170127634-170127400) | |
| 42-248, gnl|mm7|chr1 (170127611-170127420) | |
| 42-248, gnl|Mm7|chr1 (170127624-170127419) | |
| 42-248, gnl|monDom2|scaffold_16 (12380344-12380576) | |
| 42-248, gnl|monDom2|scaffold_16 (12380366-12380556) | |
| 42-248, gnl|oryCun1|scaffold_126281 (4380-4128) | |
| 42-248, gnl|oryCun1|scaffold_126281 (4339-4148) | |
| 42-248, gnl|panTro1|chr1 (141448366-141448599) | |
| 42-248, gnl|panTro1|chr19 (62312452-62312257) | |
| 42-248, gnl|rheMac2|chr1 (141123409-141123644) | |
| 42-248, gnl|rheMac2|chr16 (57440967-57441161) | |
| 42-248, gnl|rn3|chr13 (85976959-85976725) | |
| 42-248, gnl|rn3|chr6 (16897268-16897463) | |
| 42-248, gnl|tetNig1|chr1_random (3064389-3064165) | |
| 42-248, gnl|tetNig1|chr1_random (3064380-3064185) | |
| 42-248, gnl|xenTro1|scaffold_74 (1209759-1209970) | |
| 42-248, gnl|xenTro1|scaffold_74 (1209772-1209963) | |
| 390-578, gnl|bosTau2|chr3 (7286430-7286618) | |
| 390-578, gnl|canFam2|chr38 (23197210-23197029) | |
| 390-578, gnl|canFam2|chr38 (23197187-23197000) | |
| 390-578, gnl|danRer3|chr5 (25229595-25229770) | |
| 390-578, gnl|danRer3|chr5 (25229615-25229793) | |
| 390-578, gnl|dasNov1|scaffold_192825 (1025-1183) | |
| 390-578, gnl|dasNov1|scaffold_192825 (1025-1212) | |
| 390-578, gnl|echTel1|scaffold_280755 (66062-66243) | |
| 390-578, gnl|echTel1|scaffold_302285 (5311-5499) | |
| 390-578, gnl|fr1|chrUn (71380594-71380773) | |
| 390-578, gnl|fr1|chrUn (71380615-71380799) | |
| 390-578, gnl|galGal2|chr8 (3749671-3749504) | |
| 390-578, gnl|galGal2|chr8 (3749661-3749475) | |
| 390-578, gnl|hg17|chr1 (159291749-159291930) | |
| 390-578, gnl|Hg17|chr1 (159291771-159291959) | |
| 390-578, gnl|hg17|chr17 (42801140-42801317) | |
| 390-578, gnl|loxAfr1|scaffold_41256 (11078-10897) | |
| 390-578, gnl|loxAfr1|scaffold_41256 (11055-10868) | |
| 390-578, gnl|mm7|chr1 (170125957-170125778) | |
| 390-578, gnl|mm7|chr1 (170125935-170125749) | |
| 390-578, gnl|Mm7|chr1 (170125935-170125747) | |
| 390-578, gnl|monDom2|scaffold_16 (12382948-12383126) | |
| 390-578, gnl|monDom2|scaffold_16 (12382968-12383154) | |
| 390-578, gnl|oryCun1|scaffold_126281 (406-225) | |
| 390-578, gnl|oryCun1|scaffold_126281 (382-196) | |
| 390-578, gnl|panTro1|chr1 (141451200-141451381) | |
| 390-578, gnl|panTro1|chr19 (62312098-62311921) | |
| 390-578, gnl|rheMac2|chr1 (141126814-141126995) | |
| 390-578, gnl|rheMac2|chr16 (57441303-57441480) | |
| 390-578, gnl|rn3|chr13 (85975296-85975117) | |
| 390-578, gnl|rn3|chr6 (16897605-16897793) | |
| 390-578, gnl|tetNig1|chr1_random (3063776-3063608) | |
| 390-578, gnl|tetNig1|chr1_random (3063766-3063580) | |
| 390-578, gnl|xenTro1|scaffold_74 (1211511-1211674) | |
| 390-578, gnl|xenTro1|scaffold_74 (1211516-1211703) | |
| 697-1268, gnl|bosTau2|chr3 (7292470-7293043) | |
| 697-1268, gnl|Hg17|chr1 (159300719-159301279) | |
| 697-1268, gnl|Mm7|chr1 (170119048-170118479) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| sag (2.74073) | |
| lyg (1.06482) | |
| tra (0.861645) | |
| mga (0.801025) | |
| liv (0.731422) | |
| ski (0.586941) | |
| aor (0.585823) | |
| cte (0.58548) | |
| lin (0.582411) | |
| sug (0.509165) | |
| bla (0.373042) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| rec (0.346141) | |
| jca (0.34188) | |
| fco (0.314416) | |
| fat (0.294855) | |
| pla (0.267344) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| tes (0.207814) | |
| col (0.195008) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| thg (0.126791) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (2.74073) | |
| lyg (1.06482) | |
| tra (0.861645) | |
| mga (0.801025) | |
| liv (0.731422) | |
| ski (0.586941) | |
| aor (0.585823) | |
| cte (0.58548) | |
| lin (0.582411) | |
| sug (0.509165) | |
| bla (0.373042) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| rec (0.346141) | |
| jca (0.34188) | |
| fco (0.314416) | |
| fat (0.294855) | |
| pla (0.267344) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| tes (0.207814) | |
| col (0.195008) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| thg (0.126791) |