Non-Coding RNA Search

Ss1.1-Pig4-TMW8053N22.3

Sequence:


               
               TCACTAGCCCAAATAGCAAAACCATCATACCTTAACATCAGAAAGCTGTGGTACTCATTT
ATTTGGGTGTAGGTGAGCGATAGCTACTATTTTTTTTTTTTTAAGAGACCAGTCATTCAT
GTCAGAGACCAGTAATTTTTACAAGATTTGGCAAAATGTTCTGATTTAATGATTAGTTTA
CTTAATTTTAACCCAAGGTCATTTTAATTCCTTGCCATATTTACCAATGAATGATTAAAC
TCAGTGTCACATATTCCTGAAACTACAGTTAATAGCTCTTAAAGTGCCTCCGTCTAGCAC
ACAAGGAAAAAAAAAAAACAACTGACAAATTTGAAAACACATCCTGTGAATCAATTTTTA
GATGAGAAATCTTTTCTAGCAACTCAGACAGGTAACACTGTGTTAAGATATTTCAACTCC
ATCCTGGAAATGATTGCTTTCCAATGTGGGTTAGCCTTAAATGCCAAATGTGTTACCTTT
AATCAGATTCTCTGTTATCTTTGGCTGTAAATTTTTGTTTCTGTGTAATAATGTAAAGTG
TTTACCTTACATGTACAAGGGCAAAGCAAAATTCTATCACCTTCAATAGTGTTCTAACCA
TACTGTCTCTGCTACATGGAGCTTCAAGAGTGGAAATAGTTCCATGGAATAAAATGAACT
GTAATACTCATCCTAATTGCATCAGCCCTAATTGTTTTCTGAGAATACAGATATGTGTTT
TAAGCCTATTTCTGCCATGGCTCACCTGTAAATATTTTTCTGTTTTCTTCTGGGCCCATA
CTGAGTTCTTGGGCCAAGCCCGGTGGGGTAATATGCATTATAAATCATTAAGAGCTTTTT
GGTGATTCTTTATTAATGTCTGGAAGCTCAAAAGTTAAATGAGATGATGTAAATCATTTT
AAAAAATCATGTCTAATCAATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTAGCCCAAATAGCAAAACCATCATACCTTAACATCAGAAAGCTGTGGTACTCATTT
ATTTGGGTGTAGGTGAGCGATAGCTACTATTTTTTTTTTTTTAAGAGACCAGTCATTCAT
GTCAGAGACCAGTAATTTTTACAAGATTTGGCAAAATGTTCTGATTTAATGATTAGTTTA
CTTAATTTTAACCCAAGGTCATTTTAATTCCTTGCCATATTTACCAATGAATGATTAAAC
TCAGTGTCACATATTCCTGAAACTACAGTTAATAGCTCTTAAAGTGCCTCCGTCTAGCAC
ACAAGGAAAAAAAAAAAACAACTGACAAATTTGAAAACACATCCTGTGAATCAATTTTTA
GATGAGAAATCTTTTCTAGCAACTCAGACAGGTAACACTGTGTTAAGATATTTCAACTCC
ATCCTGGAAATGATTGCTTTCCAATGTGGGTTAGCCTTAAATGCCAAATGTGTTACCTTT
AATCAGATTCTCTGTTATCTTTGGCTGTAAATTTTTGTTTCTGTGTAATAATGTAAAGTG
TTTACCTTACATGTACAAGGGCAAAGCAAAATTCTATCACCTTCAATAGTGTTCTAACCA
TACTGTCTCTGCTACATGGAGCTTCAAGAGTGGAAATAGTTCCATGGAATAAAATGAACT
GTAATACTCATCCTAATTGCATCAGCCCTAATTGTTTTCTGAGAATACAGATATGTGTTT
TAAGCCTATTTCTGCCATGGCTCACCTGTAAATATTTTTCTGTTTTCTTCTGGGCCCATA
CTGAGTTCTTGGGCCAAGCCCGGTGGGGTAATATGCATTATAAATCATTAAGAGCTTTTT
GGTGATTCTTTATTAATGTCTGGAAGCTCAAAAGTTAAATGAGATGATGTAAATCATTTT
AAAAAATCATGTCTAATCAATTAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               178-703, gnl|bosTau2|chr24 (7804897-7804376)
               

               
               178-703, gnl|Hg17|chr7 (123265421-123264947)
               

               
               178-703, gnl|Mm7|chr6 (24897502-24897040)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-703, gnl|bosTau2|chr24 (7804897-7804376)
               

               
               178-703, gnl|Hg17|chr7 (123265421-123264947)
               

               
               178-703, gnl|Mm7|chr6 (24897502-24897040)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	178-703, gnl\|bosTau2\|chr24 (7804897-7804376)
	178-703, gnl\|Hg17\|chr7 (123265421-123264947)
	178-703, gnl\|Mm7\|chr6 (24897502-24897040)

	tes (0.207814)
	fco (0.157208)
	hyp (0.142837)
	pla (0.133672)
	sug (0.127291)
	pgl (0.118483)