Non-Coding RNA Search

Ss1.1-Pig4-TMW8053O02.5.5

Sequence:


               
               GCGCCCCGCGCGTCTGAGTGTGGAGCGGCCGTCTGCGGTCTCCCGGGCAGATGGGTTCCG
TGGCCTAGCGTCCCCGTCCCCGCCGTCCGTGATCGTGCGCCGAGGCCCGCGAGGGGTCGC
CGCCGAGGTTCCCAGCAGCCCCCAAGCAAGAGCATGGCAGCCATCCCCTCGAGCGGCTCG
CTCGTGGCCACCCACGACTACTACCGCTGCCGCCTGGGCTCCACTTCCAGTAACAGCTCC
TGCGGCAGTGCCGAGTGCCCCGGAGAAGCCATCCCCCACCCCCCGGGTCTCCCCAAAGCT
GACCCGGGACACTGGTGGGCTAGCTTTTTTTTCGGGAAGCCCACGCTCCCACTCATGGCC
ACGGTGCTGGAGTCCCCGGGGCACTCGGAATCTGCCGGGGCCTCCACCCGCATGATCACC
TGCGACCTGGCTCAGCAGCAGCCTGGCGGCCAGCCGGGCACACCCAACTGCAGGCCTCCC
TCCTGAGAGGCCACCACCAGCTGCCAGGCTTCCTTCCAAGGCGCTAGGCTCCTCAGAGCC
CCTCCCCTGCCCTCCCCTTCCTGAGACTCAAGAGCTGCAGCCGGAGGCAGCAGTTGGGTT
CTTTAATTGAGAACAGCACACCACCAAAAAGAAAGTGAGAGAACCCCGCTCTTGACTATC
CCAAGCCACATGAGAGCCTTTCGGACACGCCGTAACCCTGTGCCTTGCACCCAGTGGAAA
ATAAACACGGAGCAGCCAGCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCCCGCGCGTCTGAGTGTGGAGCGGCCGTCTGCGGTCTCCCGGGCAGATGGGTTCCG
TGGCCTAGCGTCCCCGTCCCCGCCGTCCGTGATCGTGCGCCGAGGCCCGCGAGGGGTCGC
CGCCGAGGTTCCCAGCAGCCCCCAAGCAAGAGCATGGCAGCCATCCCCTCGAGCGGCTCG
CTCGTGGCCACCCACGACTACTACCGCTGCCGCCTGGGCTCCACTTCCAGTAACAGCTCC
TGCGGCAGTGCCGAGTGCCCCGGAGAAGCCATCCCCCACCCCCCGGGTCTCCCCAAAGCT
GACCCGGGACACTGGTGGGCTAGCTTTTTTTTCGGGAAGCCCACGCTCCCACTCATGGCC
ACGGTGCTGGAGTCCCCGGGGCACTCGGAATCTGCCGGGGCCTCCACCCGCATGATCACC
TGCGACCTGGCTCAGCAGCAGCCTGGCGGCCAGCCGGGCACACCCAACTGCAGGCCTCCC
TCCTGAGAGGCCACCACCAGCTGCCAGGCTTCCTTCCAAGGCGCTAGGCTCCTCAGAGCC
CCTCCCCTGCCCTCCCCTTCCTGAGACTCAAGAGCTGCAGCCGGAGGCAGCAGTTGGGTT
CTTTAATTGAGAACAGCACACCACCAAAAAGAAAGTGAGAGAACCCCGCTCTTGACTATC
CCAAGCCACATGAGAGCCTTTCGGACACGCCGTAACCCTGTGCCTTGCACCCAGTGGAAA
ATAAACACGGAGCAGCCAGCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55653318|ref|XP_514780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55653318|ref|XP_514780.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-357, - strand, RNAz p=0.999559
               

               
               498-593, - strand, RNAz p=0.70604

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-357, - strand, RNAz p=0.999559
               

               
               498-593, - strand, RNAz p=0.70604

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-759, gnl|bosTau2|chr10 (56478134-56477480)
               

               
               114-759, gnl|Hg17|chr20 (61622661-61623946)
               

               
               114-759, gnl|Mm7|chrX (44753179-44753778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-759, gnl|bosTau2|chr10 (56478134-56477480)
               

               
               114-759, gnl|Hg17|chr20 (61622661-61623946)
               

               
               114-759, gnl|Mm7|chrX (44753179-44753778)

Expressed library(ies): 35 entry(ies)

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Expressed library(ies): 35 entry(ies)

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               mas (0.84122)
               

               
               nco (0.808669)
               

               
               nep (0.7357)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               lnt (0.569233)
               

               
               mcp (0.511945)
               

               
               eru (0.480192)
               

               
               nms (0.427716)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.84122)
               

               
               nco (0.808669)
               

               
               nep (0.7357)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               lnt (0.569233)
               

               
               mcp (0.511945)
               

               
               eru (0.480192)
               

               
               nms (0.427716)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	238-357, - strand, RNAz p=0.999559
	498-593, - strand, RNAz p=0.70604

	114-759, gnl\|bosTau2\|chr10 (56478134-56477480)
	114-759, gnl\|Hg17\|chr20 (61622661-61623946)
	114-759, gnl\|Mm7\|chrX (44753179-44753778)

	mas (0.84122)
	nco (0.808669)
	nep (0.7357)
	pty (0.713572)
	fbs (0.701385)
	lnt (0.569233)
	mcp (0.511945)
	eru (0.480192)
	nms (0.427716)
	cov (0.396458)
	fcc (0.39557)
	eje (0.395335)
	cut (0.339847)
	csp (0.322373)
	cli (0.305623)
	cga (0.279096)
	nmm (0.265604)
	cly (0.241284)
	jej (0.197844)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)