Ss1.1-Pig4-TMW8053O05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATAAAATTCTTAGACAGAAATTTTTTTCTGAGCGAGAGGCCAGCGCTGTCCTGTTTAC TATAACCAAAACTGTTGAATATCTCCATGCACAAGGGGTGGTTCACAGAGACTTGAAACC TAGCAACATTCTTTATGTGGATGAATCTGGCAATCCAGAATCTATTCGAATTTGTGATTT TGGCTTTGCCAAACAGCTAAGAGCAGAAAATGGTCTTCTCATGACTCCTTGTTATACTGC AAATTTTGTTGCACCAGAGGTTTTAAAACGACAAGGCTATGATGCTGCTTGTGATATATG GAGTCTTGGTGTCCTCCTCTATACAATGCTTACTGGTTACACTCCATTTGCAAACGGCCC TGATGATACACCAGAGGAAATATTGGCGCGGATAGGCAGTGGAAAATTCTCACTCAGTGG TGGCTACTGGAATTCTGTTTCAGACACAGCAAAGGACCTGGTGTCAAAGATGCTTCATGT GGATCCTCATCAGAGACTGACTGCTGCCCTTGTGCTCAGACATCCTTGGATCGTCCACTG GGACCAACTGCCACAATACCAGCTCAACAGACAGGATGCACCACATCTGGTCAAGGGTGC CATGGCAGCTACATATTCTGCTTTAAACCGTAATCAGTCACCAGTTTTGGAACCCGTAGG CCGCTCTACTCTTGCTCAGCGGAGAGGTATTAAAAAAATCACCTCCACAGCCCTGTGAAG TGACCTCAGTGAGATATTTGGTACCATGGTGTAAGCTGATAGCACAAGTTCTGGCGACAG GTAGCACATATCTGAGAGACACCTGCAAGCACACACTGTCCCAGCTGGTACCCATAATGC TGCTGCTCCTGCTGCTGCTCCCGCTTTCGTCTCTTCTCGCTTTAAATGATTGTTAGCAAG TTAGATTTTCCTGGAGCTTCAGATGAAATGAAAATGGAAACGTGATGAAGATATATTCAC TGAATCAACAAGAAGAAATAATGAACATATGAATACCACCTAAAAATACACTGAATAAAG TACTCTACACCACATAGCATTATTTTTATAGGAAATATTTCATGTCCCTTAAATATTCTT TGTTAGTTATAGGGATGGACAGTTTATGTTAAGCACTTAGCTTAAACAATCCGTTTATAT TAGCACTGTATCCCTTGTGCCATCCAACATTTTGTATGTTTTTGTAAACAGTTCATATAC AGTACATTTCTGTACTGCTTTCTTTAATGTATACATGCCTTGTTTAACTTGGAATCTATT ATTAATCAATTGACTATTAAATCTGGTTAAATAGTTCACCTGGATTAACAGTATTGTTGG ACAGCCCTAAAAATGGCCAGATTGTAGAACAGCTGTTGAATGTAATACTTCCAAAATGTA CATATCTTTCCCCATGTCTGTTTCACTGGTTCATTTGTTTGTTTCTTAAAGTCAGGTGCT CTGTTAGGCGAACCTAGAGAGCTGTTTTGGTTAGAAAGTTATCATATGTGTATGGCATGA CATCAAGAGTACACCTGTGAAGTTAGTTCATATACTTTGCAACTCCTTAGGGTCTTTTTT CCTTAATTAAGGAAGTAGTCCTTGCACTTTTATAGTATCCGTACTTAGTATTTGGCATAA ATTTGGGATTTTTCCCAGTATACATCAAAGGCCTCTGAAGAGGCCTGATAAAAAGATTGA CAAAGGAAAATTTAGCAACAGGTCATTCAAGTCCCATTGGATATTTCATGTTTACATAGA TCAAATTGCAGAATTTAGCATATGAATAACAGGATACCTACTCTTGTACACCTGCAAGGA AAGTATGCTTTTTTGGAAAAAAAAGGTAAATCATGATGAATTCTGTCCCATTAAGATGCT CTATATTAAACACTAATTTGAATGTAATAAAGGCCCAGGCCTCTATATGAAATTGGGCTT AAACTTTCTTATTCTGGGGAATAAAACATTCTTGATCAAACAGTATCTGTTCTAACCTGA ACACATAGCTAAGGTAGGTTAAGTGAATGTTCAGCATTGAGTGTTTCCTGAATTCCTCCT GATGGTTTATAGCCACATAATGCTTTCTTTAACTTCAGAAATGATCATTTTTCATATTGG TTATTGGATCTGCTTATATTATTCATTATCTACATCTAATTTGGTAATTTCCACAGATTA AAGAAACATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATAAAATTCTTAGACAGAAATTTTTTTCTGAGCGAGAGGCCAGCGCTGTCCTGTTTAC TATAACCAAAACTGTTGAATATCTCCATGCACAAGGGGTGGTTCACAGAGACTTGAAACC TAGCAACATTCTTTATGTGGATGAATCTGGCAATCCAGAATCTATTCGAATTTGTGATTT TGGCTTTGCCAAACAGCTAAGAGCAGAAAATGGTCTTCTCATGACTCCTTGTTATACTGC AAATTTTGTTGCACCAGAGGTTTTAAAACGACAAGGCTATGATGCTGCTTGTGATATATG GAGTCTTGGTGTCCTCCTCTATACAATGCTTACTGGTTACACTCCATTTGCAAACGGCCC TGATGATACACCAGAGGAAATATTGGCGCGGATAGGCAGTGGAAAATTCTCACTCAGTGG TGGCTACTGGAATTCTGTTTCAGACACAGCAAAGGACCTGGTGTCAAAGATGCTTCATGT GGATCCTCATCAGAGACTGACTGCTGCCCTTGTGCTCAGACATCCTTGGATCGTCCACTG GGACCAACTGCCACAATACCAGCTCAACAGACAGGATGCACCACATCTGGTCAAGGGTGC CATGGCAGCTACATATTCTGCTTTAAACCGTAATCAGTCACCAGTTTTGGAACCCGTAGG CCGCTCTACTCTTGCTCAGCGGAGAGGTATTAAAAAAATCACCTCCACAGCCCTGTGAAG TGACCTCAGTGAGATATTTGGTACCATGGTGTAAGCTGATAGCACAAGTTCTGGCGACAG GTAGCACATATCTGAGAGACACCTGCAAGCACACACTGTCCCAGCTGGTACCCATAATGC TGCTGCTCCTGCTGCTGCTCCCGCTTTCGTCTCTTCTCGCTTTAAATGATTGTTAGCAAG TTAGATTTTCCTGGAGCTTCAGATGAAATGAAAATGGAAACGTGATGAAGATATATTCAC TGAATCAACAAGAAGAAATAATGAACATATGAATACCACCTAAAAATACACTGAATAAAG TACTCTACACCACATAGCATTATTTTTATAGGAAATATTTCATGTCCCTTAAATATTCTT TGTTAGTTATAGGGATGGACAGTTTATGTTAAGCACTTAGCTTAAACAATCCGTTTATAT TAGCACTGTATCCCTTGTGCCATCCAACATTTTGTATGTTTTTGTAAACAGTTCATATAC AGTACATTTCTGTACTGCTTTCTTTAATGTATACATGCCTTGTTTAACTTGGAATCTATT ATTAATCAATTGACTATTAAATCTGGTTAAATAGTTCACCTGGATTAACAGTATTGTTGG ACAGCCCTAAAAATGGCCAGATTGTAGAACAGCTGTTGAATGTAATACTTCCAAAATGTA CATATCTTTCCCCATGTCTGTTTCACTGGTTCATTTGTTTGTTTCTTAAAGTCAGGTGCT CTGTTAGGCGAACCTAGAGAGCTGTTTTGGTTAGAAAGTTATCATATGTGTATGGCATGA CATCAAGAGTACACCTGTGAAGTTAGTTCATATACTTTGCAACTCCTTAGGGTCTTTTTT CCTTAATTAAGGAAGTAGTCCTTGCACTTTTATAGTATCCGTACTTAGTATTTGGCATAA ATTTGGGATTTTTCCCAGTATACATCAAAGGCCTCTGAAGAGGCCTGATAAAAAGATTGA CAAAGGAAAATTTAGCAACAGGTCATTCAAGTCCCATTGGATATTTCATGTTTACATAGA TCAAATTGCAGAATTTAGCATATGAATAACAGGATACCTACTCTTGTACACCTGCAAGGA AAGTATGCTTTTTTGGAAAAAAAAGGTAAATCATGATGAATTCTGTCCCATTAAGATGCT CTATATTAAACACTAATTTGAATGTAATAAAGGCCCAGGCCTCTATATGAAATTGGGCTT AAACTTTCTTATTCTGGGGAATAAAACATTCTTGATCAAACAGTATCTGTTCTAACCTGA ACACATAGCTAAGGTAGGTTAAGTGAATGTTCAGCATTGAGTGTTTCCTGAATTCCTCCT GATGGTTTATAGCCACATAATGCTTTCTTTAACTTCAGAAATGATCATTTTTCATATTGG TTATTGGATCTGCTTATATTATTCATTATCTACATCTAATTTGGTAATTTCCACAGATTA AAGAAACATATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 136-1268, - strand, RNAz p=0.968993 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 136-1268, - strand, RNAz p=0.968993 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 97-261, gnl|bosTau2|chrX (39138174-39138338) | |
| 97-261, gnl|Hg17|chrX (19942836-19942672) | |
| 97-261, gnl|Mm7|chrX (154123613-154123777) | |
| 336-455, gnl|bosTau2|chrX (39141514-39141633) | |
| 336-455, gnl|canFam2|chrX (16021609-16021741) | |
| 336-455, gnl|danRer3|chr5 (15092303-15092169) | |
| 336-455, gnl|dasNov1|scaffold_240157 (367-235) | |
| 336-455, gnl|echTel1|scaffold_319457 (59912-60043) | |
| 336-455, gnl|fr1|chrUn (281167204-281167325) | |
| 336-455, gnl|galGal2|chr1 (113165264-113165129) | |
| 336-455, gnl|hg17|chrX (19939407-19939539) | |
| 336-455, gnl|Hg17|chrX (19939537-19939418) | |
| 336-455, gnl|loxAfr1|scaffold_2861 (103148-103016) | |
| 336-455, gnl|mm7|chrX (154126809-154126677) | |
| 336-455, gnl|Mm7|chrX (154126677-154126796) | |
| 336-455, gnl|monDom2|scaffold_48 (13441074-13440948) | |
| 336-455, gnl|oryCun1|scaffold_178403 (7481-7349) | |
| 336-455, gnl|panTro1|chrX (20673397-20673529) | |
| 336-455, gnl|rheMac2|chrX (17911593-17911725) | |
| 336-455, gnl|rn3|chrX (56785952-56786084) | |
| 336-455, gnl|tetNig1|chr1 (4083414-4083280) | |
| 336-455, gnl|xenTro1|scaffold_461 (138175-138300) | |
| 594-2070, gnl|bosTau2|chrX (39144479-39145987) | |
| 594-2070, gnl|Hg17|chrX (19933297-19931935) | |
| 594-2070, gnl|Mm7|chrX (154137723-154139039) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-261, gnl|bosTau2|chrX (39138174-39138338) | |
| 97-261, gnl|Hg17|chrX (19942836-19942672) | |
| 97-261, gnl|Mm7|chrX (154123613-154123777) | |
| 336-455, gnl|bosTau2|chrX (39141514-39141633) | |
| 336-455, gnl|canFam2|chrX (16021609-16021741) | |
| 336-455, gnl|danRer3|chr5 (15092303-15092169) | |
| 336-455, gnl|dasNov1|scaffold_240157 (367-235) | |
| 336-455, gnl|echTel1|scaffold_319457 (59912-60043) | |
| 336-455, gnl|fr1|chrUn (281167204-281167325) | |
| 336-455, gnl|galGal2|chr1 (113165264-113165129) | |
| 336-455, gnl|hg17|chrX (19939407-19939539) | |
| 336-455, gnl|Hg17|chrX (19939537-19939418) | |
| 336-455, gnl|loxAfr1|scaffold_2861 (103148-103016) | |
| 336-455, gnl|mm7|chrX (154126809-154126677) | |
| 336-455, gnl|Mm7|chrX (154126677-154126796) | |
| 336-455, gnl|monDom2|scaffold_48 (13441074-13440948) | |
| 336-455, gnl|oryCun1|scaffold_178403 (7481-7349) | |
| 336-455, gnl|panTro1|chrX (20673397-20673529) | |
| 336-455, gnl|rheMac2|chrX (17911593-17911725) | |
| 336-455, gnl|rn3|chrX (56785952-56786084) | |
| 336-455, gnl|tetNig1|chr1 (4083414-4083280) | |
| 336-455, gnl|xenTro1|scaffold_461 (138175-138300) | |
| 594-2070, gnl|bosTau2|chrX (39144479-39145987) | |
| 594-2070, gnl|Hg17|chrX (19933297-19931935) | |
| 594-2070, gnl|Mm7|chrX (154137723-154139039) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| sug (0.381874) | |
| vin (0.332557) | |
| gul (0.177588) | |
| bfe (0.149858) | |
| ret (0.128733) | |
| med (0.116252) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.381874) | |
| vin (0.332557) | |
| gul (0.177588) | |
| bfe (0.149858) | |
| ret (0.128733) | |
| med (0.116252) |