Non-Coding RNA Search

Ss1.1-Pig4-TMW8053O11.3

Sequence:


               
               GCTCAGAAGGCTCCATGAAAGTGAAAGCTTCCGCTGCAGGAGTACTGTCACCCCAGAAGA
AATCCCCACCCACCACCATGCTGTTGCCTGCCTCGCCAGCCAAAGCCCCTGAGACAGAGC
CCATCGACGTGGCTGCTCATCTGCAGCTGTTGGGAGAGTCTCTGAGCCTCATTGGACACC
GCCTGCAGGAGACTGAGGGCATGGTGGCTGTGTCCGGCAGTTTGTCTGTGCTTCTGGATT
CCATCATCTGTGCGCTTGGCCCCTTGGCGTGTCTCACCACACAACTACCTGAGCTGAATG
GCTGCCCCAAACAGGTCTTGTCAAACACACTAGACAACATTGCTTACATCATGCCTGGAC
TGTGACAGCAAAGACTCCCGGGACAGAAACCTTATCCTACCCTGCTGCCGGCTTGTGTGT
ATGTGACTGTTCCAGATTCCTTCACTGGCCTCTGGGTGTAGGTTTTAAATTTTTATATAT
ATGCATATACATACATATATATATAATGTACAATATATACATAGGACTATACTTTGCTTT
TAGTAATTTTATGAGATGGCAGAGGTTTAGCCAAGAGGAAACCTTGGCATGAGTATGGGC
TTGGGAGTCTTTCTTTCCTGTGGTGGATAAATCTGCCTTAAAAATCAATGTAACTTGGGG
GCTGGGGGCTTGTTCTGGATGCTGAGTGCATCGCTTTACAGACAGCTAAAATGTGATTTT
TTTCCAAACTCAGTTGTACCTCCAGACCCATCACTGACCATTTGCCTTACCTGTGTCTTA
CCGTCTGACATGTAATGGGAAAGAATATGGGAAGACGTCAGTTTACTGAAAGTACAAAGC
TTTTCAACTTGAAGTGACCTAGGTGGGAGGTGATACCATCGTCCCCATCTTAATGGTTAT
TGTGATGGCCTAAGTGAACTTAGTACAGGCTTCATTCCAATTCCTGCTGTACCGGTGTCC
ATGTCTCAAAATGTATTGTAATTACTGGTACCGTTGGCAGCCATAGTAGGGGCCAAGGCG
TTCTGTGAGCCCTGGAGAGGGTAAAGCTGTCAGTGCCACCAGTTGAACGGCATATATTGT
TAGCTGACCCAGACCATCTGGTCTGCAGAACTAAGCGCTGGTGTCTTCCGTTGGCAGTGT
TAGCTTAGCTCACAGTTCTGCTGCTTAGTTGCTTGGTGTTGTGGAAGGTGAACTTTGCCC
AGCCTGATTCTTGGGTTCATCTCATTGGCTTCCCTGCTGGGCAGATACACAGCGTTCTGC
ATTCCACACGTGAGCAAATTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGAAGGCTCCATGAAAGTGAAAGCTTCCGCTGCAGGAGTACTGTCACCCCAGAAGA
AATCCCCACCCACCACCATGCTGTTGCCTGCCTCGCCAGCCAAAGCCCCTGAGACAGAGC
CCATCGACGTGGCTGCTCATCTGCAGCTGTTGGGAGAGTCTCTGAGCCTCATTGGACACC
GCCTGCAGGAGACTGAGGGCATGGTGGCTGTGTCCGGCAGTTTGTCTGTGCTTCTGGATT
CCATCATCTGTGCGCTTGGCCCCTTGGCGTGTCTCACCACACAACTACCTGAGCTGAATG
GCTGCCCCAAACAGGTCTTGTCAAACACACTAGACAACATTGCTTACATCATGCCTGGAC
TGTGACAGCAAAGACTCCCGGGACAGAAACCTTATCCTACCCTGCTGCCGGCTTGTGTGT
ATGTGACTGTTCCAGATTCCTTCACTGGCCTCTGGGTGTAGGTTTTAAATTTTTATATAT
ATGCATATACATACATATATATATAATGTACAATATATACATAGGACTATACTTTGCTTT
TAGTAATTTTATGAGATGGCAGAGGTTTAGCCAAGAGGAAACCTTGGCATGAGTATGGGC
TTGGGAGTCTTTCTTTCCTGTGGTGGATAAATCTGCCTTAAAAATCAATGTAACTTGGGG
GCTGGGGGCTTGTTCTGGATGCTGAGTGCATCGCTTTACAGACAGCTAAAATGTGATTTT
TTTCCAAACTCAGTTGTACCTCCAGACCCATCACTGACCATTTGCCTTACCTGTGTCTTA
CCGTCTGACATGTAATGGGAAAGAATATGGGAAGACGTCAGTTTACTGAAAGTACAAAGC
TTTTCAACTTGAAGTGACCTAGGTGGGAGGTGATACCATCGTCCCCATCTTAATGGTTAT
TGTGATGGCCTAAGTGAACTTAGTACAGGCTTCATTCCAATTCCTGCTGTACCGGTGTCC
ATGTCTCAAAATGTATTGTAATTACTGGTACCGTTGGCAGCCATAGTAGGGGCCAAGGCG
TTCTGTGAGCCCTGGAGAGGGTAAAGCTGTCAGTGCCACCAGTTGAACGGCATATATTGT
TAGCTGACCCAGACCATCTGGTCTGCAGAACTAAGCGCTGGTGTCTTCCGTTGGCAGTGT
TAGCTTAGCTCACAGTTCTGCTGCTTAGTTGCTTGGTGTTGTGGAAGGTGAACTTTGCCC
AGCCTGATTCTTGGGTTCATCTCATTGGCTTCCCTGCTGGGCAGATACACAGCGTTCTGC
ATTCCACACGTGAGCAAATTGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3483013|emb|CAA08991.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3483013|emb|CAA08991.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-629, + strand, RNAz p=0.998642

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-629, + strand, RNAz p=0.998642

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005487, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005487, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-198, gnl|bosTau2|chr5 (43677314-43677142)
               

               
               26-198, gnl|Hg17|chr22 (34008783-34008955)
               

               
               26-198, gnl|Mm7|chr8 (73565917-73566089)
               


               
               320-1284, gnl|bosTau2|chr5 (43668730-43667759)
               

               
               320-1284, gnl|Hg17|chr22 (34014153-34015143)
               

               
               320-1284, gnl|Mm7|chr8 (73571909-73572819)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-198, gnl|bosTau2|chr5 (43677314-43677142)
               

               
               26-198, gnl|Hg17|chr22 (34008783-34008955)
               

               
               26-198, gnl|Mm7|chr8 (73565917-73566089)
               


               
               320-1284, gnl|bosTau2|chr5 (43668730-43667759)
               

               
               320-1284, gnl|Hg17|chr22 (34014153-34015143)
               

               
               320-1284, gnl|Mm7|chr8 (73571909-73572819)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cut (0.339847)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	26-198, gnl\|bosTau2\|chr5 (43677314-43677142)
	26-198, gnl\|Hg17\|chr22 (34008783-34008955)
	26-198, gnl\|Mm7\|chr8 (73565917-73566089)

	320-1284, gnl\|bosTau2\|chr5 (43668730-43667759)
	320-1284, gnl\|Hg17\|chr22 (34014153-34015143)
	320-1284, gnl\|Mm7\|chr8 (73571909-73572819)

	cut (0.339847)
	sin (0.174948)
	rec (0.17307)
	lun (0.150489)
	jca (0.11396)
	cty (0.10408)