Ss1.1-Pig4-TMW8053P04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCCCAGGGCCCGCCCGGGACCCCCGAGCCGCCGCGGTGGACCCAGGCCAGGATGGCGG CCCAGGTGACCCTGGAGGATGCTCTGTCCAATGTGGACCTGCTGGAAGAGCTGCCTCTGC CTGACCAGCAGCCCTGCATCGAGCCCCCACCATCCTCACTGCTCTACCAGCCAAATTTCA ACACTAACTTTGAAGACAGAAATGCATTTGTCACCGGCATCGCAAGATACATTGAACAAG CGACTGTCCATTCTAGCATGAATGAGATGCTGGAGGAAGGTCAAGAGTACGCTGTCATGC TGTACACCTGGAGGAGCTGCTCTCGGGCTATCCCACAGGTGAAGTGTAACGAACAGCCCA ATAGAGTGGAAATTTATGAGAAAACTGTGGAGGTTCTTGAGCCTGAAGTCACAAAACTGA TGAATTTTATGTACTTCCAGAGGAATGCCATCGAGCGTTTCTGTGGGGAGGTGAGGCGCC TGTGCCACGCGGAGAGAAGGAAGGACTTCGTTTCTGAGGCCTACCTGATCACCCTGGGCA AGTTCATCAACATGTTTGCTGTGTTGGATGAGCTGAAGAACATGAAGTGCAGCGTGAAGA ATGACCACTCTGCCTACAAGAGGGCTGCTCAGTTTTTACGTAAAATGGCAGATCCACAGT CCATCCAGGAATCACAGAATCTATCCATGTTCCTGGCCAACCACAACAAGATCACACAAT CTCTGCAGCAGCAGCTTGAAGTGATTTCTGGCTATGAAGAGCTCTTAGCAGACATCGTGA ATTTGTGTGTGGATTACTATGAAAATAGGATGTATTTGACGCCCAGTGAGAAACACATGC TTCTCAAAGTCATGGGATTTGGTCTGTACTTGATGGATGGGAGTGTCAGCAACATTTATA AACTAGATGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCCCAGGGCCCGCCCGGGACCCCCGAGCCGCCGCGGTGGACCCAGGCCAGGATGGCGG CCCAGGTGACCCTGGAGGATGCTCTGTCCAATGTGGACCTGCTGGAAGAGCTGCCTCTGC CTGACCAGCAGCCCTGCATCGAGCCCCCACCATCCTCACTGCTCTACCAGCCAAATTTCA ACACTAACTTTGAAGACAGAAATGCATTTGTCACCGGCATCGCAAGATACATTGAACAAG CGACTGTCCATTCTAGCATGAATGAGATGCTGGAGGAAGGTCAAGAGTACGCTGTCATGC TGTACACCTGGAGGAGCTGCTCTCGGGCTATCCCACAGGTGAAGTGTAACGAACAGCCCA ATAGAGTGGAAATTTATGAGAAAACTGTGGAGGTTCTTGAGCCTGAAGTCACAAAACTGA TGAATTTTATGTACTTCCAGAGGAATGCCATCGAGCGTTTCTGTGGGGAGGTGAGGCGCC TGTGCCACGCGGAGAGAAGGAAGGACTTCGTTTCTGAGGCCTACCTGATCACCCTGGGCA AGTTCATCAACATGTTTGCTGTGTTGGATGAGCTGAAGAACATGAAGTGCAGCGTGAAGA ATGACCACTCTGCCTACAAGAGGGCTGCTCAGTTTTTACGTAAAATGGCAGATCCACAGT CCATCCAGGAATCACAGAATCTATCCATGTTCCTGGCCAACCACAACAAGATCACACAAT CTCTGCAGCAGCAGCTTGAAGTGATTTCTGGCTATGAAGAGCTCTTAGCAGACATCGTGA ATTTGTGTGTGGATTACTATGAAAATAGGATGTATTTGACGCCCAGTGAGAAACACATGC TTCTCAAAGTCATGGGATTTGGTCTGTACTTGATGGATGGGAGTGTCAGCAACATTTATA AACTAGATGCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 39-170, gnl|bosTau2|chr2 (895832-895963) | |
| 39-170, gnl|Hg17|chr15 (20477209-20477340) | |
| 39-170, gnl|Mm7|chr7 (52114338-52114469) | |
| 438-623, gnl|bosTau2|chr2 (897903-898088) | |
| 438-623, gnl|canFam2|chr3 (35010535-35010313) | |
| 438-623, gnl|danRer3|chr6 (18060952-18060737) | |
| 438-623, gnl|dasNov1|scaffold_9570 (16093-16304) | |
| 438-623, gnl|echTel1|scaffold_276944 (16130-15917) | |
| 438-623, gnl|fr1|chrUn (199720561-199720761) | |
| 438-623, gnl|galGal2|chr1 (123422181-123422389) | |
| 438-623, gnl|hg17|chr15 (20481135-20481361) | |
| 438-623, gnl|Hg17|chr15 (20481152-20481337) | |
| 438-623, gnl|mm7|chr7 (52117381-52117608) | |
| 438-623, gnl|Mm7|chr7 (52117397-52117582) | |
| 438-623, gnl|monDom2|scaffold_11 (7845511-7845735) | |
| 438-623, gnl|oryCun1|scaffold_177915 (52222-52005) | |
| 438-623, gnl|panTro1|chr16 (26119126-26118900) | |
| 438-623, gnl|rheMac2|chr7 (1705181-1705406) | |
| 438-623, gnl|rn3|chr1 (107358734-107358961) | |
| 438-623, gnl|tetNig1|chr1_random (1216255-1216055) | |
| 438-623, gnl|xenTro1|scaffold_516 (416886-417077) | |
| 717-850, gnl|bosTau2|chr2 (901903-902036) | |
| 717-850, gnl|canFam2|chr3 (35007915-35007766) | |
| 717-850, gnl|danRer3|chr6 (18057764-18057615) | |
| 717-850, gnl|dasNov1|scaffold_9570 (19756-19892) | |
| 717-850, gnl|echTel1|scaffold_276944 (10672-10523) | |
| 717-850, gnl|fr1|chrUn (199721246-199721393) | |
| 717-850, gnl|galGal2|chr1 (123423281-123423429) | |
| 717-850, gnl|hg17|chr15 (20485178-20485327) | |
| 717-850, gnl|Hg17|chr15 (20485186-20485319) | |
| 717-850, gnl|loxAfr1|scaffold_106783 (297-440) | |
| 717-850, gnl|mm7|chr7 (52120361-52120510) | |
| 717-850, gnl|Mm7|chr7 (52120369-52120502) | |
| 717-850, gnl|monDom2|scaffold_11 (7853327-7853477) | |
| 717-850, gnl|oryCun1|scaffold_177915 (48671-48522) | |
| 717-850, gnl|panTro1|chr16 (26115091-26114942) | |
| 717-850, gnl|rheMac2|chr7 (1709209-1709357) | |
| 717-850, gnl|rn3|chr1 (107361398-107361546) | |
| 717-850, gnl|tetNig1|chr1_random (1215574-1215425) | |
| 717-850, gnl|xenTro1|scaffold_516 (419791-419940) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-170, gnl|bosTau2|chr2 (895832-895963) | |
| 39-170, gnl|Hg17|chr15 (20477209-20477340) | |
| 39-170, gnl|Mm7|chr7 (52114338-52114469) | |
| 438-623, gnl|bosTau2|chr2 (897903-898088) | |
| 438-623, gnl|canFam2|chr3 (35010535-35010313) | |
| 438-623, gnl|danRer3|chr6 (18060952-18060737) | |
| 438-623, gnl|dasNov1|scaffold_9570 (16093-16304) | |
| 438-623, gnl|echTel1|scaffold_276944 (16130-15917) | |
| 438-623, gnl|fr1|chrUn (199720561-199720761) | |
| 438-623, gnl|galGal2|chr1 (123422181-123422389) | |
| 438-623, gnl|hg17|chr15 (20481135-20481361) | |
| 438-623, gnl|Hg17|chr15 (20481152-20481337) | |
| 438-623, gnl|mm7|chr7 (52117381-52117608) | |
| 438-623, gnl|Mm7|chr7 (52117397-52117582) | |
| 438-623, gnl|monDom2|scaffold_11 (7845511-7845735) | |
| 438-623, gnl|oryCun1|scaffold_177915 (52222-52005) | |
| 438-623, gnl|panTro1|chr16 (26119126-26118900) | |
| 438-623, gnl|rheMac2|chr7 (1705181-1705406) | |
| 438-623, gnl|rn3|chr1 (107358734-107358961) | |
| 438-623, gnl|tetNig1|chr1_random (1216255-1216055) | |
| 438-623, gnl|xenTro1|scaffold_516 (416886-417077) | |
| 717-850, gnl|bosTau2|chr2 (901903-902036) | |
| 717-850, gnl|canFam2|chr3 (35007915-35007766) | |
| 717-850, gnl|danRer3|chr6 (18057764-18057615) | |
| 717-850, gnl|dasNov1|scaffold_9570 (19756-19892) | |
| 717-850, gnl|echTel1|scaffold_276944 (10672-10523) | |
| 717-850, gnl|fr1|chrUn (199721246-199721393) | |
| 717-850, gnl|galGal2|chr1 (123423281-123423429) | |
| 717-850, gnl|hg17|chr15 (20485178-20485327) | |
| 717-850, gnl|Hg17|chr15 (20485186-20485319) | |
| 717-850, gnl|loxAfr1|scaffold_106783 (297-440) | |
| 717-850, gnl|mm7|chr7 (52120361-52120510) | |
| 717-850, gnl|Mm7|chr7 (52120369-52120502) | |
| 717-850, gnl|monDom2|scaffold_11 (7853327-7853477) | |
| 717-850, gnl|oryCun1|scaffold_177915 (48671-48522) | |
| 717-850, gnl|panTro1|chr16 (26115091-26114942) | |
| 717-850, gnl|rheMac2|chr7 (1709209-1709357) | |
| 717-850, gnl|rn3|chr1 (107361398-107361546) | |
| 717-850, gnl|tetNig1|chr1_random (1215574-1215425) | |
| 717-850, gnl|xenTro1|scaffold_516 (419791-419940) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| che (0.136314) |