Non-Coding RNA Search

Ss1.1-Pig4-TMW8053P05.5

Sequence:


               
               CGGGGGCGGGCGCGAACTGGGACCATGGCGGCGGCGCTGGGCAGTCGGGGCGCGCGGCGG
CTGCTGCTGCTGCTTTCGGCGCTGAAGCCAGGGCTCCACGTCCCCAGGGCCGGGCCCTCG
GCCGCGTTCAGCTCCTCTGTGACCTCTGCCAGAGTGGCCGTGAACGGCGTCCACCTGCAT
TACCTGCAGACGGGAGAGGGAGAGCACGCGGTCCTGCTGCTGCCGGGGATGTTGGGAAGT
GGCGAGACGGATTTCGGCCCTCAGATCGAGGCCCTCAACAAGAAGCTCTTCACGGTGGTC
GCCTGGGACCCCCGAGGCTACGGACGCTCCAGACCCCCGGATCGAGACTTCCCCCGGGAG
TTTTTCGAAAGGGACGCAGAAGACGCCATTGGCCTGATGAAGACGCTCAAGTTTAAGAAG
GTCTCTCTGCTGGGGTGGAGTGACGGGGGGATAACTGCCCTCACTGCGGCGGCCAGATAC
CCGTCCTACGTCAGCAAGATGGTGATCTGGGGTGCCAACGCCTACGTGACCGACCAGGAC
GAGAGGATCTATCAGGGTATCCGCGACGTTTCTAAATGGAGTGAGAGAACGAGGAAGCCG
CTGGAAGCCCTGTATGGGTTCGACTACTTTGCCAGGACCTGTGAGAAGTGGGTGGATGGC
ATCATGCAGTTTAAACGTCTTCCCGAAGGTAACATCTGTCGGCACCTGCTGCCCCTGGTG
CAGTGTCCCACCTTGATCGTGCATGGCGAGAAGGACCCTCTGGTCCCACGTTTCCACGCC
GACTATATCCATGAACATGTGCGAGGGTCACGGTTGCACCTGATGCCGGAAGGCAAGCAC
AACCTGCATTTACGTTTTGCAGATGAATTCAACAAGTTAGCAGAAGACTTCCTATGCAAC
AGTGTCCCTGAGAACATGTGACCCAGTGATTCCCCTGCCTGGGGCGGGAGCCTGGGGTGC
TGCCCCTAAAACTGCACCCCCCCACTCGTCACCCCTCAGTTCACCTGCCTCCCCGCCCCC
TGCAGCTCCCCCCAAACTGCTCCTGGCCTGGCACGAGTAACAGCATAAGCACCGTCCAGC
TTCCACAGCTGGGAAAATTCAACCCCATTTTTAAATGTGAATTTCTACCCTTGTCTTAAG
AAATAAATTCCTATGATGATTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGGCGGGCGCGAACTGGGACCATGGCGGCGGCGCTGGGCAGTCGGGGCGCGCGGCGG
CTGCTGCTGCTGCTTTCGGCGCTGAAGCCAGGGCTCCACGTCCCCAGGGCCGGGCCCTCG
GCCGCGTTCAGCTCCTCTGTGACCTCTGCCAGAGTGGCCGTGAACGGCGTCCACCTGCAT
TACCTGCAGACGGGAGAGGGAGAGCACGCGGTCCTGCTGCTGCCGGGGATGTTGGGAAGT
GGCGAGACGGATTTCGGCCCTCAGATCGAGGCCCTCAACAAGAAGCTCTTCACGGTGGTC
GCCTGGGACCCCCGAGGCTACGGACGCTCCAGACCCCCGGATCGAGACTTCCCCCGGGAG
TTTTTCGAAAGGGACGCAGAAGACGCCATTGGCCTGATGAAGACGCTCAAGTTTAAGAAG
GTCTCTCTGCTGGGGTGGAGTGACGGGGGGATAACTGCCCTCACTGCGGCGGCCAGATAC
CCGTCCTACGTCAGCAAGATGGTGATCTGGGGTGCCAACGCCTACGTGACCGACCAGGAC
GAGAGGATCTATCAGGGTATCCGCGACGTTTCTAAATGGAGTGAGAGAACGAGGAAGCCG
CTGGAAGCCCTGTATGGGTTCGACTACTTTGCCAGGACCTGTGAGAAGTGGGTGGATGGC
ATCATGCAGTTTAAACGTCTTCCCGAAGGTAACATCTGTCGGCACCTGCTGCCCCTGGTG
CAGTGTCCCACCTTGATCGTGCATGGCGAGAAGGACCCTCTGGTCCCACGTTTCCACGCC
GACTATATCCATGAACATGTGCGAGGGTCACGGTTGCACCTGATGCCGGAAGGCAAGCAC
AACCTGCATTTACGTTTTGCAGATGAATTCAACAAGTTAGCAGAAGACTTCCTATGCAAC
AGTGTCCCTGAGAACATGTGACCCAGTGATTCCCCTGCCTGGGGCGGGAGCCTGGGGTGC
TGCCCCTAAAACTGCACCCCCCCACTCGTCACCCCTCAGTTCACCTGCCTCCCCGCCCCC
TGCAGCTCCCCCCAAACTGCTCCTGGCCTGGCACGAGTAACAGCATAAGCACCGTCCAGC
TTCCACAGCTGGGAAAATTCAACCCCATTTTTAAATGTGAATTTCTACCCTTGTCTTAAG
AAATAAATTCCTATGATGATTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28950597|emb|CAD70626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28950597|emb|CAD70626.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               792-910, + strand, RNAz p=0.681712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               792-910, + strand, RNAz p=0.681712

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               99-236, gnl|bosTau2|chr23 (31805766-31805902)
               

               
               99-236, gnl|Hg17|chr6 (3068858-3068994)
               

               
               99-236, gnl|Mm7|chr13 (33461941-33462074)
               


               
               401-559, gnl|bosTau2|chr23 (31810579-31810737)
               

               
               401-559, gnl|Hg17|chr6 (3074276-3074434)
               

               
               401-559, gnl|Mm7|chr13 (33467825-33467983)
               


               
               752-951, gnl|bosTau2|chr23 (34162582-34162384)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-236, gnl|bosTau2|chr23 (31805766-31805902)
               

               
               99-236, gnl|Hg17|chr6 (3068858-3068994)
               

               
               99-236, gnl|Mm7|chr13 (33461941-33462074)
               


               
               401-559, gnl|bosTau2|chr23 (31810579-31810737)
               

               
               401-559, gnl|Hg17|chr6 (3074276-3074434)
               

               
               401-559, gnl|Mm7|chr13 (33467825-33467983)
               


               
               752-951, gnl|bosTau2|chr23 (34162582-34162384)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pla (0.534688)
               

               
               nco (0.323468)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               nco (0.323468)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	99-236, gnl\|bosTau2\|chr23 (31805766-31805902)
	99-236, gnl\|Hg17\|chr6 (3068858-3068994)
	99-236, gnl\|Mm7\|chr13 (33461941-33462074)

	401-559, gnl\|bosTau2\|chr23 (31810579-31810737)
	401-559, gnl\|Hg17\|chr6 (3074276-3074434)
	401-559, gnl\|Mm7\|chr13 (33467825-33467983)

	752-951, gnl\|bosTau2\|chr23 (34162582-34162384)

	pla (0.534688)
	nco (0.323468)
	mas (0.210305)
	eje (0.197668)
	col (0.195008)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	nje (0.16592)
	cki (0.165235)
	hyp (0.142837)
	cov (0.132153)
	jej (0.0989218)