Non-Coding RNA Search

Ss1.1-Pig4-TMW8053P13.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCAGCAAGCATTTATTGGGCTCCTACAGCA
GCCAGCCTCTGGCCCAGAGACTTGTGCCCTGAGGTCACAGAGCAGGTGAGCAGGATCTGG
GCCACAGCCAAATCAGTCGGTCTGGGTCCGGCGCTTCTTGGCTGGCCTGGAGTCCTCGGG
GGCGGCTGGGCTGGGACCGAGGTCGGGCAGCAGGTCAGGGCACAGCTTCTGCCCTATAGC
CCAGGTCCACAGGGCTGTCTCCACACGATGCGGGGTCCACAGCCCTGAGGCACTGCCATG
GCTCAGAGCTGTGGCTCGCTCCTGCACCCGGCTCAGGTACAGCAGGTAGTGCTTGAGGGT
GTACTGCAGGGCTGGCAGACCGGGCACCGCGGCCACTGCCTCCTCAGACATGAAAGCTGC
CACCTCGGGAGCTCCGGCAGCCAAGACCGCCGAGGCCGTGGCCGGGCCCACGCCCCGCAG
GGCGCGTAATTCCGTGACCGCGGCGTGCATGTCTGGCAGGAGGGGGAAGGCGGCAGCCGA
GTGCTGCACCACCAACTCCGGGGCGTTGGCGCTGACGAGCTGATGCAGGCGCGGCCTGAA
GCGGCCCCGAGCCAGCTTCCAAGCCAGCAGCTGCCCCAGCTCTTCTCGAGTCACGTGCTT
CTCCTCCCGGCCCTCGATGGCTGCGGGCAACGCCTCTCGATACCATCGGTCCAGGGCTTC
CAGCCGCCCCTGGGGGCCCGCGCGCGCTCGGAGCACTTCCCCGTGGCGGCCCAGGACGGC
GGCCCAGAGGCTCGGGTCCTCACAGCCCCAAAGGCCGCGGGCCGCCGCCATGTCCACGCG
CCGGGGCAGGGCTTCGGGGGCGGGGCGCCGGGGCGCCGGGGTGGGCTTCCGCCCCGACGA
CCTCGGCTCTCCTCAGGTTGCCGACGCCGCGCGTCGAGTCGCCGCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCAGCAAGCATTTATTGGGCTCCTACAGCA
GCCAGCCTCTGGCCCAGAGACTTGTGCCCTGAGGTCACAGAGCAGGTGAGCAGGATCTGG
GCCACAGCCAAATCAGTCGGTCTGGGTCCGGCGCTTCTTGGCTGGCCTGGAGTCCTCGGG
GGCGGCTGGGCTGGGACCGAGGTCGGGCAGCAGGTCAGGGCACAGCTTCTGCCCTATAGC
CCAGGTCCACAGGGCTGTCTCCACACGATGCGGGGTCCACAGCCCTGAGGCACTGCCATG
GCTCAGAGCTGTGGCTCGCTCCTGCACCCGGCTCAGGTACAGCAGGTAGTGCTTGAGGGT
GTACTGCAGGGCTGGCAGACCGGGCACCGCGGCCACTGCCTCCTCAGACATGAAAGCTGC
CACCTCGGGAGCTCCGGCAGCCAAGACCGCCGAGGCCGTGGCCGGGCCCACGCCCCGCAG
GGCGCGTAATTCCGTGACCGCGGCGTGCATGTCTGGCAGGAGGGGGAAGGCGGCAGCCGA
GTGCTGCACCACCAACTCCGGGGCGTTGGCGCTGACGAGCTGATGCAGGCGCGGCCTGAA
GCGGCCCCGAGCCAGCTTCCAAGCCAGCAGCTGCCCCAGCTCTTCTCGAGTCACGTGCTT
CTCCTCCCGGCCCTCGATGGCTGCGGGCAACGCCTCTCGATACCATCGGTCCAGGGCTTC
CAGCCGCCCCTGGGGGCCCGCGCGCGCTCGGAGCACTTCCCCGTGGCGGCCCAGGACGGC
GGCCCAGAGGCTCGGGTCCTCACAGCCCCAAAGGCCGCGGGCCGCCGCCATGTCCACGCG
CCGGGGCAGGGCTTCGGGGGCGGGGCGCCGGGGCGCCGGGGTGGGCTTCCGCCCCGACGA
CCTCGGCTCTCCTCAGGTTGCCGACGCCGCGCGTCGAGTCGCCGCGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870616|ref|XP_594248.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870616|ref|XP_594248.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-297, - strand, RNAz p=0.89417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-297, - strand, RNAz p=0.89417

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               61-297, gnl|bosTau2|chr25 (1219119-1218883)
               

               
               61-297, gnl|Hg17|chr16 (668570-668809)
               


               
               450-608, gnl|bosTau2|chr25 (1218231-1218072)
               

               
               450-608, gnl|danRer3|chr24 (32035799-32035625)
               

               
               450-608, gnl|fr1|chrUn (101948558-101948377)
               

               
               450-608, gnl|hg17|chr16 (669196-669389)
               

               
               450-608, gnl|Hg17|chr16 (669210-669366)
               

               
               450-608, gnl|loxAfr1|scaffold_109160 (4815-5003)
               

               
               450-608, gnl|mm7|chr17 (24016948-24016777)
               

               
               450-608, gnl|Mm7|chr17 (24016937-24016798)
               

               
               450-608, gnl|monDom2|scaffold_49 (9758070-9758259)
               

               
               450-608, gnl|panTro1|chr18 (709546-709739)
               

               
               450-608, gnl|rheMac2|chr20 (671286-671459)
               

               
               450-608, gnl|rn3|chr10 (15099189-15099019)
               

               
               450-608, gnl|tetNig1|chr2 (4733490-4733315)
               

               
               450-608, gnl|xenTro1|scaffold_142 (13365-13543)
               


               
               701-857, gnl|bosTau2|chr25 (1217775-1217620)
               

               
               701-857, gnl|Hg17|chr16 (669678-670126)
               

               
               701-857, gnl|Mm7|chr17 (24016511-24016359)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-297, gnl|bosTau2|chr25 (1219119-1218883)
               

               
               61-297, gnl|Hg17|chr16 (668570-668809)
               


               
               450-608, gnl|bosTau2|chr25 (1218231-1218072)
               

               
               450-608, gnl|danRer3|chr24 (32035799-32035625)
               

               
               450-608, gnl|fr1|chrUn (101948558-101948377)
               

               
               450-608, gnl|hg17|chr16 (669196-669389)
               

               
               450-608, gnl|Hg17|chr16 (669210-669366)
               

               
               450-608, gnl|loxAfr1|scaffold_109160 (4815-5003)
               

               
               450-608, gnl|mm7|chr17 (24016948-24016777)
               

               
               450-608, gnl|Mm7|chr17 (24016937-24016798)
               

               
               450-608, gnl|monDom2|scaffold_49 (9758070-9758259)
               

               
               450-608, gnl|panTro1|chr18 (709546-709739)
               

               
               450-608, gnl|rheMac2|chr20 (671286-671459)
               

               
               450-608, gnl|rn3|chr10 (15099189-15099019)
               

               
               450-608, gnl|tetNig1|chr2 (4733490-4733315)
               

               
               450-608, gnl|xenTro1|scaffold_142 (13365-13543)
               


               
               701-857, gnl|bosTau2|chr25 (1217775-1217620)
               

               
               701-857, gnl|Hg17|chr16 (669678-670126)
               

               
               701-857, gnl|Mm7|chr17 (24016511-24016359)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.279096)
               

               
               ute (0.265569)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

	61-297, gnl\|bosTau2\|chr25 (1219119-1218883)
	61-297, gnl\|Hg17\|chr16 (668570-668809)

	450-608, gnl\|bosTau2\|chr25 (1218231-1218072)
	450-608, gnl\|danRer3\|chr24 (32035799-32035625)
	450-608, gnl\|fr1\|chrUn (101948558-101948377)
	450-608, gnl\|hg17\|chr16 (669196-669389)
	450-608, gnl\|Hg17\|chr16 (669210-669366)
	450-608, gnl\|loxAfr1\|scaffold_109160 (4815-5003)
	450-608, gnl\|mm7\|chr17 (24016948-24016777)
	450-608, gnl\|Mm7\|chr17 (24016937-24016798)
	450-608, gnl\|monDom2\|scaffold_49 (9758070-9758259)
	450-608, gnl\|panTro1\|chr18 (709546-709739)
	450-608, gnl\|rheMac2\|chr20 (671286-671459)
	450-608, gnl\|rn3\|chr10 (15099189-15099019)
	450-608, gnl\|tetNig1\|chr2 (4733490-4733315)
	450-608, gnl\|xenTro1\|scaffold_142 (13365-13543)

	701-857, gnl\|bosTau2\|chr25 (1217775-1217620)
	701-857, gnl\|Hg17\|chr16 (669678-670126)
	701-857, gnl\|Mm7\|chr17 (24016511-24016359)

	cga (0.279096)
	ute (0.265569)
	fbs (0.175346)
	fhi (0.169578)
	pty (0.142714)
	ebs (0.118301)