Non-Coding RNA Search

Ss1.1-Pig4-TMW8053P22.3

Sequence:


               
               GGCTTAGAATATAGGATCTTTATTTCAACCAAACAGAATCAAATTTGCCTTTGTAGGAGT
TCCCATTGTGGTACAGCAGAAATGAATCTGATTAGGAACCATGAGGTTGCGGGTTTGATC
CCTGGCCTTGCTCAGCGGGTTAAGGATCCAGCATTGTTGTGAGCTGTGGTTGCAGACGTG
GCTTGGATCTGGCGTGGCTGTGGCGTAGGCCAACAGCTGTAGCTCCGACTGGATCCCTAG
CCTGGGAACCTCCATATGCCATGGGTGCGGCCCTAAAAAGCAAAAAAAATCAAAATTTAA
ATTTGCCTTTGTAATAATATATTGCCCTTAGAAAAGGAAAATTTGGATAATAAAACTTAG
ATTGTTCTATTTGCTTTCTTCTGCTTTTCAGAAGCCTGAACTCTTAAGCTCACATTTGTA
AAAGGAGAGAAGTAGGAGGGGAGAGGTAGAACCAACCACAGTATTTTATTTATTTTTTTA
AGACTTACTAAACCCAGATTTTAAAACTATTTTACATGTCAATTCTTCCCAGAAGCTTCA
AATGCATTGTATATATTAACCTTAAACATATTTTACGTAAAATAGGTCACAAAGTTATAT
AGGCTTTCAGGTTTTAGGTTTAGTTCTCACAATAATATACCAATATATTTCAATAATATA
CCAATACCCAGGGCAGGTATTATAATGAGGAACTTATATTTTCTGAAGAATGAAAAAGAC
TTTATGGTGGACTTTAACATGTGAAAATGAATTTTTTTTTTAATTTTTGTGATTTATTTT
TTTCTGAAAGAAGGAAAAGAGAGACATGTTGCAATCATCAGCATCTTAAAGGTATTCCCA
CTCAAGCCAAGGCTAAGTGCTTCATGACAGTATTAAGCAAGTCTTGTTTTGAATGGATTA
CCTAATGACTCACTGGAATGATATAATTAACTACAGAAGTAATGCCAAAACTAAGTCAAA
ACCTGATAACCAAAGTATCCCTCATTATATCATATTTGGACCTATCTGAACATTTCAGCA
CTGCAAAATAGTTTTGGTTTATGACATATGGATAGCTATTTAATAGTAAACCCAAGTTAG
CTTTTTGTTTGTCAGTTTTTTTTTTTTAATGATGTAAGTTAAATCTGTCCTTATGGGAAG
ACATTATCACAGCATGATTTAAGAGAACATTGGTTTTGTGAAGGAAAACTGAGTTCATCT
AAAGCCACTGCTAGGATTCTTTTTATATAAAGATTAATGTGTATGTGTTTATATTGACTT
TGTGTATTTCATCTTAGCTATACTATCTTAGAAAGATTTTACCATGAGCCTAAGATGTAA
ATAAATGATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTAGAATATAGGATCTTTATTTCAACCAAACAGAATCAAATTTGCCTTTGTAGGAGT
TCCCATTGTGGTACAGCAGAAATGAATCTGATTAGGAACCATGAGGTTGCGGGTTTGATC
CCTGGCCTTGCTCAGCGGGTTAAGGATCCAGCATTGTTGTGAGCTGTGGTTGCAGACGTG
GCTTGGATCTGGCGTGGCTGTGGCGTAGGCCAACAGCTGTAGCTCCGACTGGATCCCTAG
CCTGGGAACCTCCATATGCCATGGGTGCGGCCCTAAAAAGCAAAAAAAATCAAAATTTAA
ATTTGCCTTTGTAATAATATATTGCCCTTAGAAAAGGAAAATTTGGATAATAAAACTTAG
ATTGTTCTATTTGCTTTCTTCTGCTTTTCAGAAGCCTGAACTCTTAAGCTCACATTTGTA
AAAGGAGAGAAGTAGGAGGGGAGAGGTAGAACCAACCACAGTATTTTATTTATTTTTTTA
AGACTTACTAAACCCAGATTTTAAAACTATTTTACATGTCAATTCTTCCCAGAAGCTTCA
AATGCATTGTATATATTAACCTTAAACATATTTTACGTAAAATAGGTCACAAAGTTATAT
AGGCTTTCAGGTTTTAGGTTTAGTTCTCACAATAATATACCAATATATTTCAATAATATA
CCAATACCCAGGGCAGGTATTATAATGAGGAACTTATATTTTCTGAAGAATGAAAAAGAC
TTTATGGTGGACTTTAACATGTGAAAATGAATTTTTTTTTTAATTTTTGTGATTTATTTT
TTTCTGAAAGAAGGAAAAGAGAGACATGTTGCAATCATCAGCATCTTAAAGGTATTCCCA
CTCAAGCCAAGGCTAAGTGCTTCATGACAGTATTAAGCAAGTCTTGTTTTGAATGGATTA
CCTAATGACTCACTGGAATGATATAATTAACTACAGAAGTAATGCCAAAACTAAGTCAAA
ACCTGATAACCAAAGTATCCCTCATTATATCATATTTGGACCTATCTGAACATTTCAGCA
CTGCAAAATAGTTTTGGTTTATGACATATGGATAGCTATTTAATAGTAAACCCAAGTTAG
CTTTTTGTTTGTCAGTTTTTTTTTTTTAATGATGTAAGTTAAATCTGTCCTTATGGGAAG
ACATTATCACAGCATGATTTAAGAGAACATTGGTTTTGTGAAGGAAAACTGAGTTCATCT
AAAGCCACTGCTAGGATTCTTTTTATATAAAGATTAATGTGTATGTGTTTATATTGACTT
TGTGTATTTCATCTTAGCTATACTATCTTAGAAAGATTTTACCATGAGCCTAAGATGTAA
ATAAATGATTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-453, + strand, RNAz p=0.591813

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-453, + strand, RNAz p=0.591813

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               367-456, + strand, RNAmicro p=0.988956

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               367-456, + strand, RNAmicro p=0.988956

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020921, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020921, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               299-1332, gnl|bosTau2|chr10 (29119838-29118826)
               

               
               299-1332, gnl|Hg17|chr14 (50257303-50256294)
               

               
               299-1332, gnl|Mm7|chr12 (67953376-67952436)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-1332, gnl|bosTau2|chr10 (29119838-29118826)
               

               
               299-1332, gnl|Hg17|chr14 (50257303-50256294)
               

               
               299-1332, gnl|Mm7|chr12 (67953376-67952436)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)

	299-1332, gnl\|bosTau2\|chr10 (29119838-29118826)
	299-1332, gnl\|Hg17\|chr14 (50257303-50256294)
	299-1332, gnl\|Mm7\|chr12 (67953376-67952436)

	pro (0.512033)
	liv (0.438853)
	kid (0.389206)
	tra (0.246184)
	fcc (0.197785)
	rec (0.17307)
	eye (0.170503)
	tbr (0.154178)
	lin (0.145603)